miRNA display CGI


Results 41 - 60 of 589 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 5' -62.2 NC_005261.1 + 9773 0.7 0.397627
Target:  5'- cGCUGCucGUCgUGCUCgCGacCGCCGCGCUGu -3'
miRNA:   3'- -CGACG--CGG-ACGAG-GUa-GCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 10224 0.7 0.368762
Target:  5'- --cGCGCCUGC-CCAggcgggcccgcgcacUCGCCGcCGCgGg -3'
miRNA:   3'- cgaCGCGGACGaGGU---------------AGCGGC-GCGgC- -5'
23568 5' -62.2 NC_005261.1 + 10417 0.68 0.475757
Target:  5'- cGCgaGCGCgaGCggcccgCCGcCGCgGCGCCGg -3'
miRNA:   3'- -CGa-CGCGgaCGa-----GGUaGCGgCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 10840 0.78 0.108953
Target:  5'- uGCgaggGCGCCggGCUCC-UCGCCGcCGCCa -3'
miRNA:   3'- -CGa---CGCGGa-CGAGGuAGCGGC-GCGGc -5'
23568 5' -62.2 NC_005261.1 + 11120 0.67 0.531854
Target:  5'- -aUGCGCCgGCagCGUgCGCCGCcuccGCCGc -3'
miRNA:   3'- cgACGCGGaCGagGUA-GCGGCG----CGGC- -5'
23568 5' -62.2 NC_005261.1 + 11290 0.66 0.629673
Target:  5'- --cGCGCCcgGCgcCCcUgGCCGCGCUGc -3'
miRNA:   3'- cgaCGCGGa-CGa-GGuAgCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 11924 0.71 0.335482
Target:  5'- gGCcgGCGgCUGCggcggCCcgCGCCGCGgCGg -3'
miRNA:   3'- -CGa-CGCgGACGa----GGuaGCGGCGCgGC- -5'
23568 5' -62.2 NC_005261.1 + 12107 0.7 0.357931
Target:  5'- cGCgGCGCCaGCUCUAgCGCCaggaugGCGCCc -3'
miRNA:   3'- -CGaCGCGGaCGAGGUaGCGG------CGCGGc -5'
23568 5' -62.2 NC_005261.1 + 12198 0.67 0.522324
Target:  5'- uGCaGCGCC-GCcgCCggUGCCGCcGCCGc -3'
miRNA:   3'- -CGaCGCGGaCGa-GGuaGCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 12224 0.66 0.626703
Target:  5'- nGCUGCuGCC-GCcCCAugcgcaucagaaacUCGCC-CGCCGu -3'
miRNA:   3'- -CGACG-CGGaCGaGGU--------------AGCGGcGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 12433 0.69 0.448828
Target:  5'- cGgaGgGCUUGCggCGUCgGCCGCGUCGg -3'
miRNA:   3'- -CgaCgCGGACGagGUAG-CGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 12520 0.68 0.49415
Target:  5'- aGCcGaGCCcGCggcggCCGUCGCCGgGCCa -3'
miRNA:   3'- -CGaCgCGGaCGa----GGUAGCGGCgCGGc -5'
23568 5' -62.2 NC_005261.1 + 12520 0.66 0.580335
Target:  5'- --cGCGCgggGC-CCcgCGCCGCcGCCGa -3'
miRNA:   3'- cgaCGCGga-CGaGGuaGCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 12903 0.67 0.538563
Target:  5'- cCUGCGCgCUGCggacgCCGagGCCGCGgagcgcccgcggguCCGg -3'
miRNA:   3'- cGACGCG-GACGa----GGUagCGGCGC--------------GGC- -5'
23568 5' -62.2 NC_005261.1 + 13845 0.68 0.49415
Target:  5'- aCUGCGUCUcCU-CGUCGCCGgcguCGCCGg -3'
miRNA:   3'- cGACGCGGAcGAgGUAGCGGC----GCGGC- -5'
23568 5' -62.2 NC_005261.1 + 14802 0.66 0.600011
Target:  5'- aGCUGCGgCUGCggcCCGUggcgaGCC-CGCCc -3'
miRNA:   3'- -CGACGCgGACGa--GGUAg----CGGcGCGGc -5'
23568 5' -62.2 NC_005261.1 + 15203 0.68 0.51286
Target:  5'- --gGUGCCUGCUgCCGacgcUCGCgGaCGCCa -3'
miRNA:   3'- cgaCGCGGACGA-GGU----AGCGgC-GCGGc -5'
23568 5' -62.2 NC_005261.1 + 15314 0.67 0.560799
Target:  5'- cGCUGCucgGCgUgcGCUCCAaCGCCGUcCCGg -3'
miRNA:   3'- -CGACG---CGgA--CGAGGUaGCGGCGcGGC- -5'
23568 5' -62.2 NC_005261.1 + 16386 0.67 0.541447
Target:  5'- -gUGgGCCUcg-CCGUCGUCGuCGCCGg -3'
miRNA:   3'- cgACgCGGAcgaGGUAGCGGC-GCGGC- -5'
23568 5' -62.2 NC_005261.1 + 17281 0.67 0.541447
Target:  5'- cGCgggGCGCgaGcCUCCAccuUC-CCGCGCCc -3'
miRNA:   3'- -CGa--CGCGgaC-GAGGU---AGcGGCGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.