miRNA display CGI


Results 41 - 60 of 589 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 5' -62.2 NC_005261.1 + 125586 0.66 0.580335
Target:  5'- --cGCGCCggcgcgGCcCCAga-CCGCGCCGg -3'
miRNA:   3'- cgaCGCGGa-----CGaGGUagcGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 22182 0.66 0.599025
Target:  5'- cGCgggGCGCCaaggCCAUCGUggcgcagaccaugCGCGCCGu -3'
miRNA:   3'- -CGa--CGCGGacgaGGUAGCG-------------GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 109429 0.66 0.586226
Target:  5'- gGCgGCGgCUGcCUCCGccgcggccgcgagCGcCCGCGCCGc -3'
miRNA:   3'- -CGaCGCgGAC-GAGGUa------------GC-GGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 2737 0.66 0.619775
Target:  5'- gGCUGagGCCaGCgcgUCCAucagguucUCGCCGCGCa- -3'
miRNA:   3'- -CGACg-CGGaCG---AGGU--------AGCGGCGCGgc -5'
23568 5' -62.2 NC_005261.1 + 18565 0.66 0.629673
Target:  5'- --cGCGCUggaaccagaGCUCCAg-GCgCGCGCCGc -3'
miRNA:   3'- cgaCGCGGa--------CGAGGUagCG-GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 47071 0.66 0.609885
Target:  5'- aGCUGcCGCCcGggCCAcUCGCCGgGCgGc -3'
miRNA:   3'- -CGAC-GCGGaCgaGGU-AGCGGCgCGgC- -5'
23568 5' -62.2 NC_005261.1 + 43562 0.66 0.609885
Target:  5'- --aGCGCCUcagggggaaugaGCUCgCGgagccgcauguUCGCgCGCGCCGa -3'
miRNA:   3'- cgaCGCGGA------------CGAG-GU-----------AGCG-GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 6521 0.66 0.619775
Target:  5'- aGC-GCGCCgccugGCucucgaggcggUCCAgCGCCGCGCg- -3'
miRNA:   3'- -CGaCGCGGa----CG-----------AGGUaGCGGCGCGgc -5'
23568 5' -62.2 NC_005261.1 + 40108 0.66 0.580335
Target:  5'- cGCcgGUGCCgcgGCguccCCAgccUCGCCGCccGCCGc -3'
miRNA:   3'- -CGa-CGCGGa--CGa---GGU---AGCGGCG--CGGC- -5'
23568 5' -62.2 NC_005261.1 + 11290 0.66 0.629673
Target:  5'- --cGCGCCcgGCgcCCcUgGCCGCGCUGc -3'
miRNA:   3'- cgaCGCGGa-CGa-GGuAgCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 34352 0.66 0.629673
Target:  5'- gGC-GCGCCgcccgGCggcgCCGcccCGCCGCcGCCGc -3'
miRNA:   3'- -CGaCGCGGa----CGa---GGUa--GCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 107205 0.66 0.580335
Target:  5'- gGCggcGCGCCgGCUuuuggCCggCGCCGgGCCc -3'
miRNA:   3'- -CGa--CGCGGaCGA-----GGuaGCGGCgCGGc -5'
23568 5' -62.2 NC_005261.1 + 19453 0.66 0.629673
Target:  5'- aGC-GCGCCgucUGCagCGUCGgCGCGCgCGu -3'
miRNA:   3'- -CGaCGCGG---ACGagGUAGCgGCGCG-GC- -5'
23568 5' -62.2 NC_005261.1 + 31820 0.66 0.600011
Target:  5'- --cGCgGCCcGCUgCAgCGCCGCGCgGa -3'
miRNA:   3'- cgaCG-CGGaCGAgGUaGCGGCGCGgC- -5'
23568 5' -62.2 NC_005261.1 + 89099 0.66 0.609885
Target:  5'- cCUGCGCgCgggGgUCCcgccCGCCGCGCuCGa -3'
miRNA:   3'- cGACGCG-Ga--CgAGGua--GCGGCGCG-GC- -5'
23568 5' -62.2 NC_005261.1 + 31208 0.66 0.619775
Target:  5'- gGC-GCGcCCUGCUCCuugggcaCGUgGCGCuCGg -3'
miRNA:   3'- -CGaCGC-GGACGAGGua-----GCGgCGCG-GC- -5'
23568 5' -62.2 NC_005261.1 + 19639 0.66 0.609885
Target:  5'- --aGCGCgaGCUCCGcggcggCgGCgCGCGCCGc -3'
miRNA:   3'- cgaCGCGgaCGAGGUa-----G-CG-GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 107947 0.66 0.600997
Target:  5'- cGC-GgGCCaGCgUCCAggcgggcgcgcgggcCGCCGCGCCGc -3'
miRNA:   3'- -CGaCgCGGaCG-AGGUa--------------GCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 63718 0.66 0.600011
Target:  5'- --aGCGCCaugGCcCCggCGCCGCcCCGa -3'
miRNA:   3'- cgaCGCGGa--CGaGGuaGCGGCGcGGC- -5'
23568 5' -62.2 NC_005261.1 + 49105 0.66 0.589175
Target:  5'- --cGCGUgCUGCUCCGgcgCGCgcagugccacgcgCGCGCCa -3'
miRNA:   3'- cgaCGCG-GACGAGGUa--GCG-------------GCGCGGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.