miRNA display CGI


Results 41 - 60 of 589 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 5' -62.2 NC_005261.1 + 75576 0.66 0.607909
Target:  5'- cGCUG-GCCUcCUUCucggucaacggCGUCGCGCCGg -3'
miRNA:   3'- -CGACgCGGAcGAGGua---------GCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 35277 0.66 0.580335
Target:  5'- cGCgGCGCCcGCggCCGcCGCCGCaGCgGc -3'
miRNA:   3'- -CGaCGCGGaCGa-GGUaGCGGCG-CGgC- -5'
23568 5' -62.2 NC_005261.1 + 1155 0.66 0.580335
Target:  5'- cCUGCGCCgccauggGUgCCcgCGCCuccGCGCCu -3'
miRNA:   3'- cGACGCGGa------CGaGGuaGCGG---CGCGGc -5'
23568 5' -62.2 NC_005261.1 + 9715 0.66 0.629673
Target:  5'- aGCcGCcaggaGgCUGcCUCCGcCGCCGCGUCGa -3'
miRNA:   3'- -CGaCG-----CgGAC-GAGGUaGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 124049 0.66 0.609885
Target:  5'- cCUGgGCCUGa-CCcgCGCCccgagacgcGCGCCGu -3'
miRNA:   3'- cGACgCGGACgaGGuaGCGG---------CGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 47071 0.66 0.609885
Target:  5'- aGCUGcCGCCcGggCCAcUCGCCGgGCgGc -3'
miRNA:   3'- -CGAC-GCGGaCgaGGU-AGCGGCgCGgC- -5'
23568 5' -62.2 NC_005261.1 + 63718 0.66 0.600011
Target:  5'- --aGCGCCaugGCcCCggCGCCGCcCCGa -3'
miRNA:   3'- cgaCGCGGa--CGaGGuaGCGGCGcGGC- -5'
23568 5' -62.2 NC_005261.1 + 54455 0.66 0.590159
Target:  5'- aGCUG-GCgCUGCUCgGgCGCUGCGacCCGg -3'
miRNA:   3'- -CGACgCG-GACGAGgUaGCGGCGC--GGC- -5'
23568 5' -62.2 NC_005261.1 + 58123 0.66 0.600011
Target:  5'- cGCgGCGCCcaagccgGUaCCGcggCGCgCGCGCCGg -3'
miRNA:   3'- -CGaCGCGGa------CGaGGUa--GCG-GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 49105 0.66 0.589175
Target:  5'- --cGCGUgCUGCUCCGgcgCGCgcagugccacgcgCGCGCCa -3'
miRNA:   3'- cgaCGCG-GACGAGGUa--GCG-------------GCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 31208 0.66 0.619775
Target:  5'- gGC-GCGcCCUGCUCCuugggcaCGUgGCGCuCGg -3'
miRNA:   3'- -CGaCGC-GGACGAGGua-----GCGgCGCG-GC- -5'
23568 5' -62.2 NC_005261.1 + 19639 0.66 0.609885
Target:  5'- --aGCGCgaGCUCCGcggcggCgGCgCGCGCCGc -3'
miRNA:   3'- cgaCGCGgaCGAGGUa-----G-CG-GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 120498 0.66 0.580335
Target:  5'- ---cCGCCcGCUCCGagCGCCGCuCCGa -3'
miRNA:   3'- cgacGCGGaCGAGGUa-GCGGCGcGGC- -5'
23568 5' -62.2 NC_005261.1 + 19453 0.66 0.629673
Target:  5'- aGC-GCGCCgucUGCagCGUCGgCGCGCgCGu -3'
miRNA:   3'- -CGaCGCGG---ACGagGUAGCgGCGCG-GC- -5'
23568 5' -62.2 NC_005261.1 + 98337 0.66 0.580335
Target:  5'- cGC-GCGCCaGCUgCAcaGCCGCGCgCGc -3'
miRNA:   3'- -CGaCGCGGaCGAgGUagCGGCGCG-GC- -5'
23568 5' -62.2 NC_005261.1 + 34352 0.66 0.629673
Target:  5'- gGC-GCGCCgcccgGCggcgCCGcccCGCCGCcGCCGc -3'
miRNA:   3'- -CGaCGCGGa----CGa---GGUa--GCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 11290 0.66 0.629673
Target:  5'- --cGCGCCcgGCgcCCcUgGCCGCGCUGc -3'
miRNA:   3'- cgaCGCGGa-CGa-GGuAgCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 34285 0.66 0.588192
Target:  5'- cGCggucGCGCC-GCUgCAgcgucuggcagaCGCCGCGCCc -3'
miRNA:   3'- -CGa---CGCGGaCGAgGUa-----------GCGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 56947 0.66 0.619775
Target:  5'- uGC-GCGCCgcGCUCCGgcucgCGCagGCgGCCGg -3'
miRNA:   3'- -CGaCGCGGa-CGAGGUa----GCGg-CG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 31680 0.66 0.619775
Target:  5'- cGC-GCGCCgGC-CCGgacgCgGCCGCcGCCGa -3'
miRNA:   3'- -CGaCGCGGaCGaGGUa---G-CGGCG-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.