miRNA display CGI


Results 41 - 60 of 589 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 5' -62.2 NC_005261.1 + 95784 0.73 0.233328
Target:  5'- cGCUGCGCCggcgcGCUgCua-GCCGgCGCCGg -3'
miRNA:   3'- -CGACGCGGa----CGAgGuagCGGC-GCGGC- -5'
23568 5' -62.2 NC_005261.1 + 1523 0.73 0.238864
Target:  5'- --gGCGCCaGCUCCAgcgcgCGCCGC-CCGc -3'
miRNA:   3'- cgaCGCGGaCGAGGUa----GCGGCGcGGC- -5'
23568 5' -62.2 NC_005261.1 + 73933 0.73 0.256135
Target:  5'- uGCgUGUGCCUGCUCCGgcUUGCagacgcggggCGCGCCc -3'
miRNA:   3'- -CG-ACGCGGACGAGGU--AGCG----------GCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 113168 0.73 0.244511
Target:  5'- --aGCGCCUGCUCC-UgGCCGUcaugGCCa -3'
miRNA:   3'- cgaCGCGGACGAGGuAgCGGCG----CGGc -5'
23568 5' -62.2 NC_005261.1 + 35906 0.73 0.244511
Target:  5'- aGCUgGCGCg-GCUgCG-CGCCGCGCCGc -3'
miRNA:   3'- -CGA-CGCGgaCGAgGUaGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 106368 0.73 0.250267
Target:  5'- cGCUGaCGCCg---CCGUCGCCGuUGCCGc -3'
miRNA:   3'- -CGAC-GCGGacgaGGUAGCGGC-GCGGC- -5'
23568 5' -62.2 NC_005261.1 + 29843 0.73 0.250267
Target:  5'- aGCUgcGCGCCgUGCUcgCCGgccgCGCgGCGCCGg -3'
miRNA:   3'- -CGA--CGCGG-ACGA--GGUa---GCGgCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 125129 0.73 0.244511
Target:  5'- uGgUGCGUCUGUgUCCAuagcaUCGCCGgCGCCGu -3'
miRNA:   3'- -CgACGCGGACG-AGGU-----AGCGGC-GCGGC- -5'
23568 5' -62.2 NC_005261.1 + 134360 0.73 0.250267
Target:  5'- aGCUgcGCGCCgUGCUcgCCGgccgCGCgGCGCCGg -3'
miRNA:   3'- -CGA--CGCGG-ACGA--GGUa---GCGgCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 91414 0.73 0.250267
Target:  5'- cGC-GCGCCUGgCgcgcgCCAUcCGCgCGCGCCGc -3'
miRNA:   3'- -CGaCGCGGAC-Ga----GGUA-GCG-GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 108207 0.73 0.262115
Target:  5'- aGCUGCGCCagcacggcgcGCUCCAgcauggCGCaCGUGCCc -3'
miRNA:   3'- -CGACGCGGa---------CGAGGUa-----GCG-GCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 68557 0.73 0.256135
Target:  5'- uGCUGCGCggGCUCUuugagcgcGUCGCCGCcgaggcggGCCGc -3'
miRNA:   3'- -CGACGCGgaCGAGG--------UAGCGGCG--------CGGC- -5'
23568 5' -62.2 NC_005261.1 + 117629 0.73 0.262115
Target:  5'- aGCgaccGCGCCggGC-CCG-CGCCGCGCCc -3'
miRNA:   3'- -CGa---CGCGGa-CGaGGUaGCGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 97176 0.73 0.250267
Target:  5'- --cGCGCCgccgGCUCUGagGCCGgCGCCGg -3'
miRNA:   3'- cgaCGCGGa---CGAGGUagCGGC-GCGGC- -5'
23568 5' -62.2 NC_005261.1 + 84765 0.73 0.262115
Target:  5'- uGC-GCGCCUGCUgCGUC-CCGC-CCGg -3'
miRNA:   3'- -CGaCGCGGACGAgGUAGcGGCGcGGC- -5'
23568 5' -62.2 NC_005261.1 + 87222 0.73 0.238864
Target:  5'- cGCU-CGCCgaGCUCC--CGCCGCGCCc -3'
miRNA:   3'- -CGAcGCGGa-CGAGGuaGCGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 85142 0.73 0.233328
Target:  5'- cGCUGCGugccuuCCUGCggUCCGUgCGCCGCcCCGg -3'
miRNA:   3'- -CGACGC------GGACG--AGGUA-GCGGCGcGGC- -5'
23568 5' -62.2 NC_005261.1 + 80679 0.73 0.233328
Target:  5'- aGCcggGCGCgUGCgacgugugcCCGUgCGCCGCGCCGu -3'
miRNA:   3'- -CGa--CGCGgACGa--------GGUA-GCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 77010 0.73 0.233328
Target:  5'- cGC-GCGCCgccCUCC-UCGCCGaCGCCGa -3'
miRNA:   3'- -CGaCGCGGac-GAGGuAGCGGC-GCGGC- -5'
23568 5' -62.2 NC_005261.1 + 73448 0.73 0.244511
Target:  5'- cGCUGCGCC-GCa-CGUCGUggCGCGCCGc -3'
miRNA:   3'- -CGACGCGGaCGagGUAGCG--GCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.