miRNA display CGI


Results 21 - 40 of 589 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 5' -62.2 NC_005261.1 + 121944 0.75 0.179312
Target:  5'- aGCaGCGCCaGCUugaaCCAgcUCGCCGUGCCGc -3'
miRNA:   3'- -CGaCGCGGaCGA----GGU--AGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 84233 0.75 0.174994
Target:  5'- gGCgGCGCCUGUgcgCCGcgcgcuggagcUCGCCGCGCUc -3'
miRNA:   3'- -CGaCGCGGACGa--GGU-----------AGCGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 89866 0.75 0.181065
Target:  5'- cCUGCGCCUcccgaaguggagccgGCUCCucggccUCGCCGCGCgCGc -3'
miRNA:   3'- cGACGCGGA---------------CGAGGu-----AGCGGCGCG-GC- -5'
23568 5' -62.2 NC_005261.1 + 90664 0.75 0.178441
Target:  5'- uCUGCGCCaUGCgcgacgggcacgCCAacuUCGCCGCGCCc -3'
miRNA:   3'- cGACGCGG-ACGa-----------GGU---AGCGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 69530 0.75 0.174994
Target:  5'- gGCcgGCGCCg---CCGUCGuCCGCGCCGg -3'
miRNA:   3'- -CGa-CGCGGacgaGGUAGC-GGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 133620 0.75 0.188232
Target:  5'- cGCUG-GCgCUGUgggCCGcgcUCGCCGCGCCGc -3'
miRNA:   3'- -CGACgCG-GACGa--GGU---AGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 76649 0.75 0.174994
Target:  5'- cGCgaGCGCCUGCgaggUCggCGCCGUGCUGg -3'
miRNA:   3'- -CGa-CGCGGACGa---GGuaGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 87251 0.74 0.217363
Target:  5'- cGCUcGCGCCcacuUGCaCgGUCGUCGCGCCGc -3'
miRNA:   3'- -CGA-CGCGG----ACGaGgUAGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 46184 0.74 0.227899
Target:  5'- --gGCGCagucgcGCUCCAaaagcgcacgUCGCCGCGCCGc -3'
miRNA:   3'- cgaCGCGga----CGAGGU----------AGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 70931 0.74 0.227899
Target:  5'- aGCUccaGCGCCUGCgcguccgCCGggaaCGCCGaCGCCGc -3'
miRNA:   3'- -CGA---CGCGGACGa------GGUa---GCGGC-GCGGC- -5'
23568 5' -62.2 NC_005261.1 + 60573 0.74 0.212253
Target:  5'- cCUGCGCCUGCaggcgccggCCGUCGgCgaugGCGCCGg -3'
miRNA:   3'- cGACGCGGACGa--------GGUAGCgG----CGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 66253 0.74 0.216333
Target:  5'- cGCUGCGCaccugccgcgcGCUCCG-CGCCccGCGCCGa -3'
miRNA:   3'- -CGACGCGga---------CGAGGUaGCGG--CGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 131430 0.74 0.227899
Target:  5'- aGCgGCGCCgGCgccccCCuugCGCCGCGCCu -3'
miRNA:   3'- -CGaCGCGGaCGa----GGua-GCGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 70255 0.74 0.222578
Target:  5'- cGCUGCGgUaagcgaaCUCCAUCGCCGCGgCGg -3'
miRNA:   3'- -CGACGCgGac-----GAGGUAGCGGCGCgGC- -5'
23568 5' -62.2 NC_005261.1 + 3115 0.74 0.224694
Target:  5'- cGCUGCggagacgcgggguccGCCUcgcGCUCCGcCGCCGgGCCGc -3'
miRNA:   3'- -CGACG---------------CGGA---CGAGGUaGCGGCgCGGC- -5'
23568 5' -62.2 NC_005261.1 + 78445 0.74 0.227899
Target:  5'- cCUGcCGCCcGCcgCCGUCGCUGCgGCCGa -3'
miRNA:   3'- cGAC-GCGGaCGa-GGUAGCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 76914 0.74 0.217363
Target:  5'- cGCUGUGCgUGCUggGcCGCCGCGUCGg -3'
miRNA:   3'- -CGACGCGgACGAggUaGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 74186 0.74 0.227899
Target:  5'- --cGCGCCUGCcggcucagaCCAUCGCCagcaacGCGCCGc -3'
miRNA:   3'- cgaCGCGGACGa--------GGUAGCGG------CGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 45403 0.74 0.212253
Target:  5'- aGCUGUcguGCCUGCUgCggCGCCuGCGCCc -3'
miRNA:   3'- -CGACG---CGGACGAgGuaGCGG-CGCGGc -5'
23568 5' -62.2 NC_005261.1 + 91695 0.73 0.237192
Target:  5'- cGC-GCGCCUGCgacagCCGgcugcaaggccggcUCGCCGCGgCGg -3'
miRNA:   3'- -CGaCGCGGACGa----GGU--------------AGCGGCGCgGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.