miRNA display CGI


Results 21 - 40 of 589 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 5' -62.2 NC_005261.1 + 40108 0.66 0.580335
Target:  5'- cGCcgGUGCCgcgGCguccCCAgccUCGCCGCccGCCGc -3'
miRNA:   3'- -CGa-CGCGGa--CGa---GGU---AGCGGCG--CGGC- -5'
23568 5' -62.2 NC_005261.1 + 40603 0.66 0.609885
Target:  5'- --cGCGCCcGCUCCGccCGCUcCGCCc -3'
miRNA:   3'- cgaCGCGGaCGAGGUa-GCGGcGCGGc -5'
23568 5' -62.2 NC_005261.1 + 22182 0.66 0.599025
Target:  5'- cGCgggGCGCCaaggCCAUCGUggcgcagaccaugCGCGCCGu -3'
miRNA:   3'- -CGa--CGCGGacgaGGUAGCG-------------GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 87371 0.66 0.580335
Target:  5'- gGCgaagGCGCCgaccuggGCgagCCAcaggcgccagcUCGCgGCGCCa -3'
miRNA:   3'- -CGa---CGCGGa------CGa--GGU-----------AGCGgCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 37263 0.66 0.600011
Target:  5'- cGCUggGCGCCU--UCCAcgagacCGCgCGCGCCGu -3'
miRNA:   3'- -CGA--CGCGGAcgAGGUa-----GCG-GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 75576 0.66 0.607909
Target:  5'- cGCUG-GCCUcCUUCucggucaacggCGUCGCGCCGg -3'
miRNA:   3'- -CGACgCGGAcGAGGua---------GCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 14802 0.66 0.600011
Target:  5'- aGCUGCGgCUGCggcCCGUggcgaGCC-CGCCc -3'
miRNA:   3'- -CGACGCgGACGa--GGUAg----CGGcGCGGc -5'
23568 5' -62.2 NC_005261.1 + 125586 0.66 0.580335
Target:  5'- --cGCGCCggcgcgGCcCCAga-CCGCGCCGg -3'
miRNA:   3'- cgaCGCGGa-----CGaGGUagcGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 31820 0.66 0.600011
Target:  5'- --cGCgGCCcGCUgCAgCGCCGCGCgGa -3'
miRNA:   3'- cgaCG-CGGaCGAgGUaGCGGCGCGgC- -5'
23568 5' -62.2 NC_005261.1 + 1155 0.66 0.580335
Target:  5'- cCUGCGCCgccauggGUgCCcgCGCCuccGCGCCu -3'
miRNA:   3'- cGACGCGGa------CGaGGuaGCGG---CGCGGc -5'
23568 5' -62.2 NC_005261.1 + 98337 0.66 0.580335
Target:  5'- cGC-GCGCCaGCUgCAcaGCCGCGCgCGc -3'
miRNA:   3'- -CGaCGCGGaCGAgGUagCGGCGCG-GC- -5'
23568 5' -62.2 NC_005261.1 + 34285 0.66 0.588192
Target:  5'- cGCggucGCGCC-GCUgCAgcgucuggcagaCGCCGCGCCc -3'
miRNA:   3'- -CGa---CGCGGaCGAgGUa-----------GCGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 43562 0.66 0.609885
Target:  5'- --aGCGCCUcagggggaaugaGCUCgCGgagccgcauguUCGCgCGCGCCGa -3'
miRNA:   3'- cgaCGCGGA------------CGAG-GU-----------AGCG-GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 120498 0.66 0.580335
Target:  5'- ---cCGCCcGCUCCGagCGCCGCuCCGa -3'
miRNA:   3'- cgacGCGGaCGAGGUa-GCGGCGcGGC- -5'
23568 5' -62.2 NC_005261.1 + 135801 0.66 0.580335
Target:  5'- cGCUG-GCCgagaucgcgGC-CCGcCGCCGCGCgGg -3'
miRNA:   3'- -CGACgCGGa--------CGaGGUaGCGGCGCGgC- -5'
23568 5' -62.2 NC_005261.1 + 134702 0.66 0.590159
Target:  5'- nGC-GCGCCgagGCggc--CGCCGCGCUGg -3'
miRNA:   3'- -CGaCGCGGa--CGagguaGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 35277 0.66 0.580335
Target:  5'- cGCgGCGCCcGCggCCGcCGCCGCaGCgGc -3'
miRNA:   3'- -CGaCGCGGaCGa-GGUaGCGGCG-CGgC- -5'
23568 5' -62.2 NC_005261.1 + 54455 0.66 0.590159
Target:  5'- aGCUG-GCgCUGCUCgGgCGCUGCGacCCGg -3'
miRNA:   3'- -CGACgCG-GACGAGgUaGCGGCGC--GGC- -5'
23568 5' -62.2 NC_005261.1 + 58123 0.66 0.600011
Target:  5'- cGCgGCGCCcaagccgGUaCCGcggCGCgCGCGCCGg -3'
miRNA:   3'- -CGaCGCGGa------CGaGGUa--GCG-GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 119820 0.66 0.609885
Target:  5'- uCUGCGCUgggGuCUCCGagGCCcGCGuCCGc -3'
miRNA:   3'- cGACGCGGa--C-GAGGUagCGG-CGC-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.