Results 21 - 40 of 589 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23568 | 5' | -62.2 | NC_005261.1 | + | 107205 | 0.66 | 0.580335 |
Target: 5'- gGCggcGCGCCgGCUuuuggCCggCGCCGgGCCc -3' miRNA: 3'- -CGa--CGCGGaCGA-----GGuaGCGGCgCGGc -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 119820 | 0.66 | 0.609885 |
Target: 5'- uCUGCGCUgggGuCUCCGagGCCcGCGuCCGc -3' miRNA: 3'- cGACGCGGa--C-GAGGUagCGG-CGC-GGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 125877 | 0.66 | 0.590159 |
Target: 5'- --cGCGCCgguUGCcgCCGcggcggCgGCCGCGCCGg -3' miRNA: 3'- cgaCGCGG---ACGa-GGUa-----G-CGGCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 22182 | 0.66 | 0.599025 |
Target: 5'- cGCgggGCGCCaaggCCAUCGUggcgcagaccaugCGCGCCGu -3' miRNA: 3'- -CGa--CGCGGacgaGGUAGCG-------------GCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 135801 | 0.66 | 0.580335 |
Target: 5'- cGCUG-GCCgagaucgcgGC-CCGcCGCCGCGCgGg -3' miRNA: 3'- -CGACgCGGa--------CGaGGUaGCGGCGCGgC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 19639 | 0.66 | 0.609885 |
Target: 5'- --aGCGCgaGCUCCGcggcggCgGCgCGCGCCGc -3' miRNA: 3'- cgaCGCGgaCGAGGUa-----G-CG-GCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 136387 | 0.66 | 0.590159 |
Target: 5'- --cGgGCCcgGCgCCuUCGCgCGCGCCGa -3' miRNA: 3'- cgaCgCGGa-CGaGGuAGCG-GCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 124923 | 0.66 | 0.580335 |
Target: 5'- cGCUGCGUacgagGCccCCGUCGCacaccuGCGCCc -3' miRNA: 3'- -CGACGCGga---CGa-GGUAGCGg-----CGCGGc -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 47071 | 0.66 | 0.609885 |
Target: 5'- aGCUGcCGCCcGggCCAcUCGCCGgGCgGc -3' miRNA: 3'- -CGAC-GCGGaCgaGGU-AGCGGCgCGgC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 87371 | 0.66 | 0.580335 |
Target: 5'- gGCgaagGCGCCgaccuggGCgagCCAcaggcgccagcUCGCgGCGCCa -3' miRNA: 3'- -CGa---CGCGGa------CGa--GGU-----------AGCGgCGCGGc -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 114742 | 0.66 | 0.580335 |
Target: 5'- --cGCGCCUGC-CCAggCGggcCCGCGCa- -3' miRNA: 3'- cgaCGCGGACGaGGUa-GC---GGCGCGgc -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 35277 | 0.66 | 0.580335 |
Target: 5'- cGCgGCGCCcGCggCCGcCGCCGCaGCgGc -3' miRNA: 3'- -CGaCGCGGaCGa-GGUaGCGGCG-CGgC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 40603 | 0.66 | 0.609885 |
Target: 5'- --cGCGCCcGCUCCGccCGCUcCGCCc -3' miRNA: 3'- cgaCGCGGaCGAGGUa-GCGGcGCGGc -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 31820 | 0.66 | 0.600011 |
Target: 5'- --cGCgGCCcGCUgCAgCGCCGCGCgGa -3' miRNA: 3'- cgaCG-CGGaCGAgGUaGCGGCGCGgC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 34285 | 0.66 | 0.588192 |
Target: 5'- cGCggucGCGCC-GCUgCAgcgucuggcagaCGCCGCGCCc -3' miRNA: 3'- -CGa---CGCGGaCGAgGUa-----------GCGGCGCGGc -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 37263 | 0.66 | 0.600011 |
Target: 5'- cGCUggGCGCCU--UCCAcgagacCGCgCGCGCCGu -3' miRNA: 3'- -CGA--CGCGGAcgAGGUa-----GCG-GCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 54455 | 0.66 | 0.590159 |
Target: 5'- aGCUG-GCgCUGCUCgGgCGCUGCGacCCGg -3' miRNA: 3'- -CGACgCG-GACGAGgUaGCGGCGC--GGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 89500 | 0.66 | 0.600011 |
Target: 5'- cGCaGUGCCUGCUggagauugcCCGUugcaacaucaCGCC-CGCCGg -3' miRNA: 3'- -CGaCGCGGACGA---------GGUA----------GCGGcGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 107947 | 0.66 | 0.600997 |
Target: 5'- cGC-GgGCCaGCgUCCAggcgggcgcgcgggcCGCCGCGCCGc -3' miRNA: 3'- -CGaCgCGGaCG-AGGUa--------------GCGGCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 120498 | 0.66 | 0.580335 |
Target: 5'- ---cCGCCcGCUCCGagCGCCGCuCCGa -3' miRNA: 3'- cgacGCGGaCGAGGUa-GCGGCGcGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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