miRNA display CGI


Results 1 - 20 of 589 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 5' -62.2 NC_005261.1 + 107205 0.66 0.580335
Target:  5'- gGCggcGCGCCgGCUuuuggCCggCGCCGgGCCc -3'
miRNA:   3'- -CGa--CGCGGaCGA-----GGuaGCGGCgCGGc -5'
23568 5' -62.2 NC_005261.1 + 124923 0.66 0.580335
Target:  5'- cGCUGCGUacgagGCccCCGUCGCacaccuGCGCCc -3'
miRNA:   3'- -CGACGCGga---CGa-GGUAGCGg-----CGCGGc -5'
23568 5' -62.2 NC_005261.1 + 40108 0.66 0.580335
Target:  5'- cGCcgGUGCCgcgGCguccCCAgccUCGCCGCccGCCGc -3'
miRNA:   3'- -CGa-CGCGGa--CGa---GGU---AGCGGCG--CGGC- -5'
23568 5' -62.2 NC_005261.1 + 1155 0.66 0.580335
Target:  5'- cCUGCGCCgccauggGUgCCcgCGCCuccGCGCCu -3'
miRNA:   3'- cGACGCGGa------CGaGGuaGCGG---CGCGGc -5'
23568 5' -62.2 NC_005261.1 + 34285 0.66 0.588192
Target:  5'- cGCggucGCGCC-GCUgCAgcgucuggcagaCGCCGCGCCc -3'
miRNA:   3'- -CGa---CGCGGaCGAgGUa-----------GCGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 51264 0.66 0.588192
Target:  5'- uGCUGcCGCCggacgugUGCUucacggucuuugaCCAgccCGCCGCGCgCGg -3'
miRNA:   3'- -CGAC-GCGG-------ACGA-------------GGUa--GCGGCGCG-GC- -5'
23568 5' -62.2 NC_005261.1 + 35277 0.66 0.580335
Target:  5'- cGCgGCGCCcGCggCCGcCGCCGCaGCgGc -3'
miRNA:   3'- -CGaCGCGGaCGa-GGUaGCGGCG-CGgC- -5'
23568 5' -62.2 NC_005261.1 + 54455 0.66 0.590159
Target:  5'- aGCUG-GCgCUGCUCgGgCGCUGCGacCCGg -3'
miRNA:   3'- -CGACgCG-GACGAGgUaGCGGCGC--GGC- -5'
23568 5' -62.2 NC_005261.1 + 44997 0.66 0.580335
Target:  5'- gGCgacgGCgGCC-GCUUUuUUGCCGCGCUGg -3'
miRNA:   3'- -CGa---CG-CGGaCGAGGuAGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 135801 0.66 0.580335
Target:  5'- cGCUG-GCCgagaucgcgGC-CCGcCGCCGCGCgGg -3'
miRNA:   3'- -CGACgCGGa--------CGaGGUaGCGGCGCGgC- -5'
23568 5' -62.2 NC_005261.1 + 49105 0.66 0.589175
Target:  5'- --cGCGUgCUGCUCCGgcgCGCgcagugccacgcgCGCGCCa -3'
miRNA:   3'- cgaCGCG-GACGAGGUa--GCG-------------GCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 54608 0.66 0.580335
Target:  5'- cGCUGgaccuCGCgCUGgaCCA-CGCCGCGgCGg -3'
miRNA:   3'- -CGAC-----GCG-GACgaGGUaGCGGCGCgGC- -5'
23568 5' -62.2 NC_005261.1 + 114742 0.66 0.580335
Target:  5'- --cGCGCCUGC-CCAggCGggcCCGCGCa- -3'
miRNA:   3'- cgaCGCGGACGaGGUa-GC---GGCGCGgc -5'
23568 5' -62.2 NC_005261.1 + 109429 0.66 0.586226
Target:  5'- gGCgGCGgCUGcCUCCGccgcggccgcgagCGcCCGCGCCGc -3'
miRNA:   3'- -CGaCGCgGAC-GAGGUa------------GC-GGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 87371 0.66 0.580335
Target:  5'- gGCgaagGCGCCgaccuggGCgagCCAcaggcgccagcUCGCgGCGCCa -3'
miRNA:   3'- -CGa---CGCGGa------CGa--GGU-----------AGCGgCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 120498 0.66 0.580335
Target:  5'- ---cCGCCcGCUCCGagCGCCGCuCCGa -3'
miRNA:   3'- cgacGCGGaCGAGGUa-GCGGCGcGGC- -5'
23568 5' -62.2 NC_005261.1 + 125586 0.66 0.580335
Target:  5'- --cGCGCCggcgcgGCcCCAga-CCGCGCCGg -3'
miRNA:   3'- cgaCGCGGa-----CGaGGUagcGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 98337 0.66 0.580335
Target:  5'- cGC-GCGCCaGCUgCAcaGCCGCGCgCGc -3'
miRNA:   3'- -CGaCGCGGaCGAgGUagCGGCGCG-GC- -5'
23568 5' -62.2 NC_005261.1 + 134702 0.66 0.590159
Target:  5'- nGC-GCGCCgagGCggc--CGCCGCGCUGg -3'
miRNA:   3'- -CGaCGCGGa--CGagguaGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 125877 0.66 0.590159
Target:  5'- --cGCGCCgguUGCcgCCGcggcggCgGCCGCGCCGg -3'
miRNA:   3'- cgaCGCGG---ACGa-GGUa-----G-CGGCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.