miRNA display CGI


Results 1 - 20 of 589 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 5' -62.2 NC_005261.1 + 1630 0.81 0.074148
Target:  5'- cGC-GCGCC-GCUCCA-CGCUGCGCCGg -3'
miRNA:   3'- -CGaCGCGGaCGAGGUaGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 73448 0.73 0.244511
Target:  5'- cGCUGCGCC-GCa-CGUCGUggCGCGCCGc -3'
miRNA:   3'- -CGACGCGGaCGagGUAGCG--GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 35906 0.73 0.244511
Target:  5'- aGCUgGCGCg-GCUgCG-CGCCGCGCCGc -3'
miRNA:   3'- -CGA-CGCGgaCGAgGUaGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 87222 0.73 0.238864
Target:  5'- cGCU-CGCCgaGCUCC--CGCCGCGCCc -3'
miRNA:   3'- -CGAcGCGGa-CGAGGuaGCGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 106040 0.73 0.238864
Target:  5'- --gGCGCCaGCUCCAgcgcgCGCCGC-CCGc -3'
miRNA:   3'- cgaCGCGGaCGAGGUa----GCGGCGcGGC- -5'
23568 5' -62.2 NC_005261.1 + 85142 0.73 0.233328
Target:  5'- cGCUGCGugccuuCCUGCggUCCGUgCGCCGCcCCGg -3'
miRNA:   3'- -CGACGC------GGACG--AGGUA-GCGGCGcGGC- -5'
23568 5' -62.2 NC_005261.1 + 80679 0.73 0.233328
Target:  5'- aGCcggGCGCgUGCgacgugugcCCGUgCGCCGCGCCGu -3'
miRNA:   3'- -CGa--CGCGgACGa--------GGUA-GCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 78445 0.74 0.227899
Target:  5'- cCUGcCGCCcGCcgCCGUCGCUGCgGCCGa -3'
miRNA:   3'- cGAC-GCGGaCGa-GGUAGCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 3115 0.74 0.224694
Target:  5'- cGCUGCggagacgcgggguccGCCUcgcGCUCCGcCGCCGgGCCGc -3'
miRNA:   3'- -CGACG---------------CGGA---CGAGGUaGCGGCgCGGC- -5'
23568 5' -62.2 NC_005261.1 + 70255 0.74 0.222578
Target:  5'- cGCUGCGgUaagcgaaCUCCAUCGCCGCGgCGg -3'
miRNA:   3'- -CGACGCgGac-----GAGGUAGCGGCGCgGC- -5'
23568 5' -62.2 NC_005261.1 + 66253 0.74 0.216333
Target:  5'- cGCUGCGCaccugccgcgcGCUCCG-CGCCccGCGCCGa -3'
miRNA:   3'- -CGACGCGga---------CGAGGUaGCGG--CGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 60573 0.74 0.212253
Target:  5'- cCUGCGCCUGCaggcgccggCCGUCGgCgaugGCGCCGg -3'
miRNA:   3'- cGACGCGGACGa--------GGUAGCgG----CGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 89866 0.75 0.181065
Target:  5'- cCUGCGCCUcccgaaguggagccgGCUCCucggccUCGCCGCGCgCGc -3'
miRNA:   3'- cGACGCGGA---------------CGAGGu-----AGCGGCGCG-GC- -5'
23568 5' -62.2 NC_005261.1 + 90664 0.75 0.178441
Target:  5'- uCUGCGCCaUGCgcgacgggcacgCCAacuUCGCCGCGCCc -3'
miRNA:   3'- cGACGCGG-ACGa-----------GGU---AGCGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 69530 0.75 0.174994
Target:  5'- gGCcgGCGCCg---CCGUCGuCCGCGCCGg -3'
miRNA:   3'- -CGa-CGCGGacgaGGUAGC-GGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 84233 0.75 0.174994
Target:  5'- gGCgGCGCCUGUgcgCCGcgcgcuggagcUCGCCGCGCUc -3'
miRNA:   3'- -CGaCGCGGACGa--GGU-----------AGCGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 33700 0.77 0.147288
Target:  5'- aGCUGCGCCUggugGCggccgCCGUCGCgGcCGCCa -3'
miRNA:   3'- -CGACGCGGA----CGa----GGUAGCGgC-GCGGc -5'
23568 5' -62.2 NC_005261.1 + 10840 0.78 0.108953
Target:  5'- uGCgaggGCGCCggGCUCC-UCGCCGcCGCCa -3'
miRNA:   3'- -CGa---CGCGGa-CGAGGuAGCGGC-GCGGc -5'
23568 5' -62.2 NC_005261.1 + 50733 0.8 0.084366
Target:  5'- gGCgaGCGCCUGCgcgCCAgcacgGCCGCGCCGa -3'
miRNA:   3'- -CGa-CGCGGACGa--GGUag---CGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 92589 0.83 0.050679
Target:  5'- cGCUGgGCaCUGCUCCGgcgcgggcccgccgCGCCGCGCCGc -3'
miRNA:   3'- -CGACgCG-GACGAGGUa-------------GCGGCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.