miRNA display CGI


Results 1 - 20 of 589 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 5' -62.2 NC_005261.1 + 73353 0.66 0.629673
Target:  5'- cGCccgGCGCCgGCUCag--GCgGCGCCa -3'
miRNA:   3'- -CGa--CGCGGaCGAGguagCGgCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 88246 0.66 0.619775
Target:  5'- cGCcGUGuCCUccuuccGCUUCAUcgCGCCGCGCUGc -3'
miRNA:   3'- -CGaCGC-GGA------CGAGGUA--GCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 82579 0.66 0.619775
Target:  5'- aGCUcGCGCagcGCgUCC-UCGuuGCGCUGg -3'
miRNA:   3'- -CGA-CGCGga-CG-AGGuAGCggCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 122688 1.09 0.000694
Target:  5'- aGCUGCGCCUGCUCCAUCGCCGCGCCGc -3'
miRNA:   3'- -CGACGCGGACGAGGUAGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 118396 0.66 0.629673
Target:  5'- cGCUgGCgGCCgcggGCgCCGcaGCCGCGCUGg -3'
miRNA:   3'- -CGA-CG-CGGa---CGaGGUagCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 84659 0.66 0.629673
Target:  5'- gGCUgGCGCCgcccGCgCCcgCgGCCGCGCa- -3'
miRNA:   3'- -CGA-CGCGGa---CGaGGuaG-CGGCGCGgc -5'
23568 5' -62.2 NC_005261.1 + 12224 0.66 0.626703
Target:  5'- nGCUGCuGCC-GCcCCAugcgcaucagaaacUCGCC-CGCCGu -3'
miRNA:   3'- -CGACG-CGGaCGaGGU--------------AGCGGcGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 8311 0.66 0.620765
Target:  5'- aGCUGCcCCUcacccuCUCCucccccgacccgcgCGCCGUGCCGg -3'
miRNA:   3'- -CGACGcGGAc-----GAGGua------------GCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 132385 0.66 0.619775
Target:  5'- cGCgGCG-CUGUUCCccGagGCCGCcGCCGa -3'
miRNA:   3'- -CGaCGCgGACGAGG--UagCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 106478 0.66 0.619775
Target:  5'- --aGCGCCggGCUCCccUCGUCGCcCUGg -3'
miRNA:   3'- cgaCGCGGa-CGAGGu-AGCGGCGcGGC- -5'
23568 5' -62.2 NC_005261.1 + 86198 0.66 0.619775
Target:  5'- --aGCGg--GCUCCgcGUCGgCGCGCCGa -3'
miRNA:   3'- cgaCGCggaCGAGG--UAGCgGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 22814 0.66 0.619775
Target:  5'- gGCgGCG-CUGCcgCCGcCGCCguugGCGCCGg -3'
miRNA:   3'- -CGaCGCgGACGa-GGUaGCGG----CGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 123958 0.66 0.629673
Target:  5'- cGCaGCGCCcGCUCCG-CGa-GCGCUa -3'
miRNA:   3'- -CGaCGCGGaCGAGGUaGCggCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 70538 0.66 0.619775
Target:  5'- gGCgGCGCCcGCgccCCAccCGCCgcaggGCGCCGc -3'
miRNA:   3'- -CGaCGCGGaCGa--GGUa-GCGG-----CGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 61529 0.66 0.629673
Target:  5'- --cGgGCCUuCUCCGgcaagCGCCGCGgCGc -3'
miRNA:   3'- cgaCgCGGAcGAGGUa----GCGGCGCgGC- -5'
23568 5' -62.2 NC_005261.1 + 72471 0.66 0.619775
Target:  5'- gGCgaGCGCgaGCgcggCCAgCGCCaggaGCGCCGc -3'
miRNA:   3'- -CGa-CGCGgaCGa---GGUaGCGG----CGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 134288 0.66 0.619775
Target:  5'- uCUGgGCgUgGgUCCAcgucgccgccuUCGCCGCGCUGg -3'
miRNA:   3'- cGACgCGgA-CgAGGU-----------AGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 87554 0.66 0.619775
Target:  5'- gGCUggGCGUCaGCUuggCCGUCagccCCGCGCCGc -3'
miRNA:   3'- -CGA--CGCGGaCGA---GGUAGc---GGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 4409 0.66 0.629673
Target:  5'- gGCgGCGCgCUGCcgggCCAg-GCCuCGCCGg -3'
miRNA:   3'- -CGaCGCG-GACGa---GGUagCGGcGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 71120 0.66 0.629673
Target:  5'- aGCuUGCGCCcGCgcgCCAcgaCGCUcucaaGCGCCGc -3'
miRNA:   3'- -CG-ACGCGGaCGa--GGUa--GCGG-----CGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.