miRNA display CGI


Results 1 - 20 of 589 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 5' -62.2 NC_005261.1 + 122688 1.09 0.000694
Target:  5'- aGCUGCGCCUGCUCCAUCGCCGCGCCGc -3'
miRNA:   3'- -CGACGCGGACGAGGUAGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 92589 0.83 0.050679
Target:  5'- cGCUGgGCaCUGCUCCGgcgcgggcccgccgCGCCGCGCCGc -3'
miRNA:   3'- -CGACgCG-GACGAGGUa-------------GCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 1630 0.81 0.074148
Target:  5'- cGC-GCGCC-GCUCCA-CGCUGCGCCGg -3'
miRNA:   3'- -CGaCGCGGaCGAGGUaGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 102964 0.81 0.076092
Target:  5'- cGCggGCGCCgcggGCUCCGcCGCCGCGCgCGa -3'
miRNA:   3'- -CGa-CGCGGa---CGAGGUaGCGGCGCG-GC- -5'
23568 5' -62.2 NC_005261.1 + 50733 0.8 0.084366
Target:  5'- gGCgaGCGCCUGCgcgCCAgcacgGCCGCGCCGa -3'
miRNA:   3'- -CGa-CGCGGACGa--GGUag---CGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 76085 0.79 0.107305
Target:  5'- uGCUGCGCCUcguggcGCUggagcuggagaaccgCCAccgCGCCGCGCCGg -3'
miRNA:   3'- -CGACGCGGA------CGA---------------GGUa--GCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 10840 0.78 0.108953
Target:  5'- uGCgaggGCGCCggGCUCC-UCGCCGcCGCCa -3'
miRNA:   3'- -CGa---CGCGGa-CGAGGuAGCGGC-GCGGc -5'
23568 5' -62.2 NC_005261.1 + 132955 0.78 0.108953
Target:  5'- cGCUGCGCCgacgugGCcgccUUCGUCGCCGCGCa- -3'
miRNA:   3'- -CGACGCGGa-----CG----AGGUAGCGGCGCGgc -5'
23568 5' -62.2 NC_005261.1 + 118117 0.78 0.12056
Target:  5'- cGCUGCGCCgccgGCUCg--CGCCGCucgGCCGg -3'
miRNA:   3'- -CGACGCGGa---CGAGguaGCGGCG---CGGC- -5'
23568 5' -62.2 NC_005261.1 + 57565 0.78 0.123637
Target:  5'- --cGCGCCcgGCUCCggCGCCGCGuuGa -3'
miRNA:   3'- cgaCGCGGa-CGAGGuaGCGGCGCggC- -5'
23568 5' -62.2 NC_005261.1 + 66116 0.77 0.126786
Target:  5'- cGCaGCGCCuUGC-CCAUCGUCaGCGCCGu -3'
miRNA:   3'- -CGaCGCGG-ACGaGGUAGCGG-CGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 124412 0.77 0.136684
Target:  5'- aCUGCagcgccaugGCCUGCUUCAUCG-CGCGCCGc -3'
miRNA:   3'- cGACG---------CGGACGAGGUAGCgGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 33700 0.77 0.147288
Target:  5'- aGCUGCGCCUggugGCggccgCCGUCGCgGcCGCCa -3'
miRNA:   3'- -CGACGCGGA----CGa----GGUAGCGgC-GCGGc -5'
23568 5' -62.2 NC_005261.1 + 78981 0.77 0.147288
Target:  5'- cGC-GgGCCUGCUCCAgcuuaGCCGCGUCa -3'
miRNA:   3'- -CGaCgCGGACGAGGUag---CGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 108744 0.77 0.147288
Target:  5'- gGCgGCGCCgcgGCgUCCGcggcgCGCCGCGCCa -3'
miRNA:   3'- -CGaCGCGGa--CG-AGGUa----GCGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 50845 0.76 0.150986
Target:  5'- aGCUgGCGCCUGUggcucgcCCAggucggcgccuUCGCCGCGCUGg -3'
miRNA:   3'- -CGA-CGCGGACGa------GGU-----------AGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 129315 0.76 0.150986
Target:  5'- --cGCGCCUGCgCUggCGCCGCGUCGc -3'
miRNA:   3'- cgaCGCGGACGaGGuaGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 75288 0.76 0.150986
Target:  5'- uGCUGUGCCUGCaCC-UCGCgcacCGCGCCa -3'
miRNA:   3'- -CGACGCGGACGaGGuAGCG----GCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 108383 0.76 0.154769
Target:  5'- cGCguccGCGCCcgcgcGCUCCAgcaGCCGCGCCa -3'
miRNA:   3'- -CGa---CGCGGa----CGAGGUag-CGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 76649 0.75 0.174994
Target:  5'- cGCgaGCGCCUGCgaggUCggCGCCGUGCUGg -3'
miRNA:   3'- -CGa-CGCGGACGa---GGuaGCGGCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.