Results 21 - 40 of 589 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23568 | 5' | -62.2 | NC_005261.1 | + | 84233 | 0.75 | 0.174994 |
Target: 5'- gGCgGCGCCUGUgcgCCGcgcgcuggagcUCGCCGCGCUc -3' miRNA: 3'- -CGaCGCGGACGa--GGU-----------AGCGGCGCGGc -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 69530 | 0.75 | 0.174994 |
Target: 5'- gGCcgGCGCCg---CCGUCGuCCGCGCCGg -3' miRNA: 3'- -CGa-CGCGGacgaGGUAGC-GGCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 90664 | 0.75 | 0.178441 |
Target: 5'- uCUGCGCCaUGCgcgacgggcacgCCAacuUCGCCGCGCCc -3' miRNA: 3'- cGACGCGG-ACGa-----------GGU---AGCGGCGCGGc -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 106894 | 0.75 | 0.179312 |
Target: 5'- uGCaGCGCCUGCgucgUCCG-CGCCGCGgCGc -3' miRNA: 3'- -CGaCGCGGACG----AGGUaGCGGCGCgGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 121944 | 0.75 | 0.179312 |
Target: 5'- aGCaGCGCCaGCUugaaCCAgcUCGCCGUGCCGc -3' miRNA: 3'- -CGaCGCGGaCGA----GGU--AGCGGCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 89866 | 0.75 | 0.181065 |
Target: 5'- cCUGCGCCUcccgaaguggagccgGCUCCucggccUCGCCGCGCgCGc -3' miRNA: 3'- cGACGCGGA---------------CGAGGu-----AGCGGCGCG-GC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 133620 | 0.75 | 0.188232 |
Target: 5'- cGCUG-GCgCUGUgggCCGcgcUCGCCGCGCCGc -3' miRNA: 3'- -CGACgCG-GACGa--GGU---AGCGGCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 45403 | 0.74 | 0.212253 |
Target: 5'- aGCUGUcguGCCUGCUgCggCGCCuGCGCCc -3' miRNA: 3'- -CGACG---CGGACGAgGuaGCGG-CGCGGc -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 60573 | 0.74 | 0.212253 |
Target: 5'- cCUGCGCCUGCaggcgccggCCGUCGgCgaugGCGCCGg -3' miRNA: 3'- cGACGCGGACGa--------GGUAGCgG----CGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 66253 | 0.74 | 0.216333 |
Target: 5'- cGCUGCGCaccugccgcgcGCUCCG-CGCCccGCGCCGa -3' miRNA: 3'- -CGACGCGga---------CGAGGUaGCGG--CGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 87251 | 0.74 | 0.217363 |
Target: 5'- cGCUcGCGCCcacuUGCaCgGUCGUCGCGCCGc -3' miRNA: 3'- -CGA-CGCGG----ACGaGgUAGCGGCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 76914 | 0.74 | 0.217363 |
Target: 5'- cGCUGUGCgUGCUggGcCGCCGCGUCGg -3' miRNA: 3'- -CGACGCGgACGAggUaGCGGCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 70255 | 0.74 | 0.222578 |
Target: 5'- cGCUGCGgUaagcgaaCUCCAUCGCCGCGgCGg -3' miRNA: 3'- -CGACGCgGac-----GAGGUAGCGGCGCgGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 3115 | 0.74 | 0.224694 |
Target: 5'- cGCUGCggagacgcgggguccGCCUcgcGCUCCGcCGCCGgGCCGc -3' miRNA: 3'- -CGACG---------------CGGA---CGAGGUaGCGGCgCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 74186 | 0.74 | 0.227899 |
Target: 5'- --cGCGCCUGCcggcucagaCCAUCGCCagcaacGCGCCGc -3' miRNA: 3'- cgaCGCGGACGa--------GGUAGCGG------CGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 70931 | 0.74 | 0.227899 |
Target: 5'- aGCUccaGCGCCUGCgcguccgCCGggaaCGCCGaCGCCGc -3' miRNA: 3'- -CGA---CGCGGACGa------GGUa---GCGGC-GCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 78445 | 0.74 | 0.227899 |
Target: 5'- cCUGcCGCCcGCcgCCGUCGCUGCgGCCGa -3' miRNA: 3'- cGAC-GCGGaCGa-GGUAGCGGCG-CGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 131430 | 0.74 | 0.227899 |
Target: 5'- aGCgGCGCCgGCgccccCCuugCGCCGCGCCu -3' miRNA: 3'- -CGaCGCGGaCGa----GGua-GCGGCGCGGc -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 46184 | 0.74 | 0.227899 |
Target: 5'- --gGCGCagucgcGCUCCAaaagcgcacgUCGCCGCGCCGc -3' miRNA: 3'- cgaCGCGga----CGAGGU----------AGCGGCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 77010 | 0.73 | 0.233328 |
Target: 5'- cGC-GCGCCgccCUCC-UCGCCGaCGCCGa -3' miRNA: 3'- -CGaCGCGGac-GAGGuAGCGGC-GCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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