miRNA display CGI


Results 21 - 40 of 589 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 5' -62.2 NC_005261.1 + 3377 0.67 0.570547
Target:  5'- cGCgaGCGCg-GCcgCCA--GCCGCGCCGg -3'
miRNA:   3'- -CGa-CGCGgaCGa-GGUagCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 3430 0.66 0.600997
Target:  5'- cGC-GgGCCaGCgUCCAggcgggcgcgcgggcCGCCGCGCCGc -3'
miRNA:   3'- -CGaCgCGGaCG-AGGUa--------------GCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 3563 0.69 0.434814
Target:  5'- cGCgGCGCCgcuaaggcgcgcgcGCUCCAccgcgUCgcggGCCGCGCCa -3'
miRNA:   3'- -CGaCGCGGa-------------CGAGGU-----AG----CGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 3695 0.68 0.454147
Target:  5'- cGCUGCaGCCgagagcaccgggaGCUCagacgCGCCGCuGCCGg -3'
miRNA:   3'- -CGACG-CGGa------------CGAGgua--GCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 3902 0.68 0.49415
Target:  5'- cGCgGCGCggGCgCCcgCGCCGCcggcGCCGg -3'
miRNA:   3'- -CGaCGCGgaCGaGGuaGCGGCG----CGGC- -5'
23568 5' -62.2 NC_005261.1 + 3993 0.68 0.503467
Target:  5'- cGCaggGCGCgUGCgCCA-CGCCGaCGCUGc -3'
miRNA:   3'- -CGa--CGCGgACGaGGUaGCGGC-GCGGC- -5'
23568 5' -62.2 NC_005261.1 + 4409 0.66 0.629673
Target:  5'- gGCgGCGCgCUGCcgggCCAg-GCCuCGCCGg -3'
miRNA:   3'- -CGaCGCG-GACGa---GGUagCGGcGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 4463 0.67 0.551097
Target:  5'- aGCgGCGgCgGC-CCGUCGCgCGgCGCCGc -3'
miRNA:   3'- -CGaCGCgGaCGaGGUAGCG-GC-GCGGC- -5'
23568 5' -62.2 NC_005261.1 + 4912 0.66 0.586226
Target:  5'- gGCgGCGgCUGcCUCCGccgcggccgcgagCGcCCGCGCCGc -3'
miRNA:   3'- -CGaCGCgGAC-GAGGUa------------GC-GGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 5143 0.67 0.522324
Target:  5'- cGCUcgcGCGCCUcgGC-CCGgcggGCCGCGUCGa -3'
miRNA:   3'- -CGA---CGCGGA--CGaGGUag--CGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 5599 0.69 0.405899
Target:  5'- cGCcGCGCCcGCgUCCucggCGCCaGCGCCc -3'
miRNA:   3'- -CGaCGCGGaCG-AGGua--GCGG-CGCGGc -5'
23568 5' -62.2 NC_005261.1 + 6450 0.71 0.321097
Target:  5'- cGCgGCGUCgggGC-CCAgcggcgcgccCGCCGCGCCGg -3'
miRNA:   3'- -CGaCGCGGa--CGaGGUa---------GCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 6521 0.66 0.619775
Target:  5'- aGC-GCGCCgccugGCucucgaggcggUCCAgCGCCGCGCg- -3'
miRNA:   3'- -CGaCGCGGa----CG-----------AGGUaGCGGCGCGgc -5'
23568 5' -62.2 NC_005261.1 + 6796 0.67 0.531854
Target:  5'- cGCgGCGCaagggggGCgCCggCGCCGCuGCCGg -3'
miRNA:   3'- -CGaCGCGga-----CGaGGuaGCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 7462 0.66 0.629673
Target:  5'- cGCgggGCGCCagcUGCUCCGUgGUuaccagcagCGCGgCGa -3'
miRNA:   3'- -CGa--CGCGG---ACGAGGUAgCG---------GCGCgGC- -5'
23568 5' -62.2 NC_005261.1 + 7728 0.7 0.379018
Target:  5'- --aGCGCCUGCgCCAcgucgucggggcccUCGCCGCcgaggcacGCCGc -3'
miRNA:   3'- cgaCGCGGACGaGGU--------------AGCGGCG--------CGGC- -5'
23568 5' -62.2 NC_005261.1 + 7885 0.69 0.448828
Target:  5'- aGCgaGCgGCuCUGUUCCggCGCgGCGCCa -3'
miRNA:   3'- -CGa-CG-CG-GACGAGGuaGCGgCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 7921 0.69 0.414278
Target:  5'- --gGCGCCUgaGCUCCAUC-CUGCucGCCGc -3'
miRNA:   3'- cgaCGCGGA--CGAGGUAGcGGCG--CGGC- -5'
23568 5' -62.2 NC_005261.1 + 8311 0.66 0.620765
Target:  5'- aGCUGCcCCUcacccuCUCCucccccgacccgcgCGCCGUGCCGg -3'
miRNA:   3'- -CGACGcGGAc-----GAGGua------------GCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 9715 0.66 0.629673
Target:  5'- aGCcGCcaggaGgCUGcCUCCGcCGCCGCGUCGa -3'
miRNA:   3'- -CGaCG-----CgGAC-GAGGUaGCGGCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.