miRNA display CGI


Results 21 - 40 of 589 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 5' -62.2 NC_005261.1 + 112828 0.66 0.620765
Target:  5'- aGCUGCcCCUcacccuCUCCucccccgacccgcgCGCCGUGCCGg -3'
miRNA:   3'- -CGACGcGGAc-----GAGGua------------GCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 8311 0.66 0.620765
Target:  5'- aGCUGCcCCUcacccuCUCCucccccgacccgcgCGCCGUGCCGg -3'
miRNA:   3'- -CGACGcGGAc-----GAGGua------------GCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 132385 0.66 0.619775
Target:  5'- cGCgGCG-CUGUUCCccGagGCCGCcGCCGa -3'
miRNA:   3'- -CGaCGCgGACGAGG--UagCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 22814 0.66 0.619775
Target:  5'- gGCgGCG-CUGCcgCCGcCGCCguugGCGCCGg -3'
miRNA:   3'- -CGaCGCgGACGa-GGUaGCGG----CGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 98313 0.66 0.619775
Target:  5'- gGCggGCGCC-GCcgCCAgcggCGgCGCGCCc -3'
miRNA:   3'- -CGa-CGCGGaCGa-GGUa---GCgGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 2737 0.66 0.619775
Target:  5'- gGCUGagGCCaGCgcgUCCAucagguucUCGCCGCGCa- -3'
miRNA:   3'- -CGACg-CGGaCG---AGGU--------AGCGGCGCGgc -5'
23568 5' -62.2 NC_005261.1 + 31208 0.66 0.619775
Target:  5'- gGC-GCGcCCUGCUCCuugggcaCGUgGCGCuCGg -3'
miRNA:   3'- -CGaCGC-GGACGAGGua-----GCGgCGCG-GC- -5'
23568 5' -62.2 NC_005261.1 + 6521 0.66 0.619775
Target:  5'- aGC-GCGCCgccugGCucucgaggcggUCCAgCGCCGCGCg- -3'
miRNA:   3'- -CGaCGCGGa----CG-----------AGGUaGCGGCGCGgc -5'
23568 5' -62.2 NC_005261.1 + 75688 0.66 0.619775
Target:  5'- gGCgGCGCCUcucggcgugggGC-CCAU-GCCGCGCgGc -3'
miRNA:   3'- -CGaCGCGGA-----------CGaGGUAgCGGCGCGgC- -5'
23568 5' -62.2 NC_005261.1 + 56947 0.66 0.619775
Target:  5'- uGC-GCGCCgcGCUCCGgcucgCGCagGCgGCCGg -3'
miRNA:   3'- -CGaCGCGGa-CGAGGUa----GCGg-CG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 127331 0.66 0.619775
Target:  5'- gGCgGCG-CUGCcgCCGcCGCCguugGCGCCGg -3'
miRNA:   3'- -CGaCGCgGACGa-GGUaGCGG----CGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 39949 0.66 0.619775
Target:  5'- cGCggacGCGCCggGCgUCgAaCGCgCGCGCCGc -3'
miRNA:   3'- -CGa---CGCGGa-CG-AGgUaGCG-GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 34031 0.66 0.619775
Target:  5'- cGCgaGCGCCUGgacgCCGUC-CCGC-CCGa -3'
miRNA:   3'- -CGa-CGCGGACga--GGUAGcGGCGcGGC- -5'
23568 5' -62.2 NC_005261.1 + 67584 0.66 0.619775
Target:  5'- cGCgGCGCCgaacCUCag-CGCCGCGgCGc -3'
miRNA:   3'- -CGaCGCGGac--GAGguaGCGGCGCgGC- -5'
23568 5' -62.2 NC_005261.1 + 31680 0.66 0.619775
Target:  5'- cGC-GCGCCgGC-CCGgacgCgGCCGCcGCCGa -3'
miRNA:   3'- -CGaCGCGGaCGaGGUa---G-CGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 61354 0.66 0.619775
Target:  5'- aGC-GUGCCgucgGcCUCC-UCGCCggGCGCCa -3'
miRNA:   3'- -CGaCGCGGa---C-GAGGuAGCGG--CGCGGc -5'
23568 5' -62.2 NC_005261.1 + 86198 0.66 0.619775
Target:  5'- --aGCGg--GCUCCgcGUCGgCGCGCCGa -3'
miRNA:   3'- cgaCGCggaCGAGG--UAGCgGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 70538 0.66 0.619775
Target:  5'- gGCgGCGCCcGCgccCCAccCGCCgcaggGCGCCGc -3'
miRNA:   3'- -CGaCGCGGaCGa--GGUa-GCGG-----CGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 19735 0.66 0.619775
Target:  5'- aGCgGCGCCagGgUCCGcagCGCCGCauaCCGg -3'
miRNA:   3'- -CGaCGCGGa-CgAGGUa--GCGGCGc--GGC- -5'
23568 5' -62.2 NC_005261.1 + 72471 0.66 0.619775
Target:  5'- gGCgaGCGCgaGCgcggCCAgCGCCaggaGCGCCGc -3'
miRNA:   3'- -CGa-CGCGgaCGa---GGUaGCGG----CGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.