miRNA display CGI


Results 41 - 60 of 589 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 5' -62.2 NC_005261.1 + 61354 0.66 0.619775
Target:  5'- aGC-GUGCCgucgGcCUCC-UCGCCggGCGCCa -3'
miRNA:   3'- -CGaCGCGGa---C-GAGGuAGCGG--CGCGGc -5'
23568 5' -62.2 NC_005261.1 + 2737 0.66 0.619775
Target:  5'- gGCUGagGCCaGCgcgUCCAucagguucUCGCCGCGCa- -3'
miRNA:   3'- -CGACg-CGGaCG---AGGU--------AGCGGCGCGgc -5'
23568 5' -62.2 NC_005261.1 + 56947 0.66 0.619775
Target:  5'- uGC-GCGCCgcGCUCCGgcucgCGCagGCgGCCGg -3'
miRNA:   3'- -CGaCGCGGa-CGAGGUa----GCGg-CG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 75688 0.66 0.619775
Target:  5'- gGCgGCGCCUcucggcgugggGC-CCAU-GCCGCGCgGc -3'
miRNA:   3'- -CGaCGCGGA-----------CGaGGUAgCGGCGCGgC- -5'
23568 5' -62.2 NC_005261.1 + 31208 0.66 0.619775
Target:  5'- gGC-GCGcCCUGCUCCuugggcaCGUgGCGCuCGg -3'
miRNA:   3'- -CGaCGC-GGACGAGGua-----GCGgCGCG-GC- -5'
23568 5' -62.2 NC_005261.1 + 72471 0.66 0.619775
Target:  5'- gGCgaGCGCgaGCgcggCCAgCGCCaggaGCGCCGc -3'
miRNA:   3'- -CGa-CGCGgaCGa---GGUaGCGG----CGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 67584 0.66 0.619775
Target:  5'- cGCgGCGCCgaacCUCag-CGCCGCGgCGc -3'
miRNA:   3'- -CGaCGCGGac--GAGguaGCGGCGCgGC- -5'
23568 5' -62.2 NC_005261.1 + 94594 0.66 0.618785
Target:  5'- --cGCGCCcuccGC-CCAcgagcgcgcgcccUCGCCGCcGCCGg -3'
miRNA:   3'- cgaCGCGGa---CGaGGU-------------AGCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 103250 0.66 0.618785
Target:  5'- cGC-GCGCCcGCgUCCG-CGCacagccgcuccagCGCGCCGg -3'
miRNA:   3'- -CGaCGCGGaCG-AGGUaGCG-------------GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 47071 0.66 0.609885
Target:  5'- aGCUGcCGCCcGggCCAcUCGCCGgGCgGc -3'
miRNA:   3'- -CGAC-GCGGaCgaGGU-AGCGGCgCGgC- -5'
23568 5' -62.2 NC_005261.1 + 89099 0.66 0.609885
Target:  5'- cCUGCGCgCgggGgUCCcgccCGCCGCGCuCGa -3'
miRNA:   3'- cGACGCG-Ga--CgAGGua--GCGGCGCG-GC- -5'
23568 5' -62.2 NC_005261.1 + 124049 0.66 0.609885
Target:  5'- cCUGgGCCUGa-CCcgCGCCccgagacgcGCGCCGu -3'
miRNA:   3'- cGACgCGGACgaGGuaGCGG---------CGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 40603 0.66 0.609885
Target:  5'- --cGCGCCcGCUCCGccCGCUcCGCCc -3'
miRNA:   3'- cgaCGCGGaCGAGGUa-GCGGcGCGGc -5'
23568 5' -62.2 NC_005261.1 + 88841 0.66 0.609885
Target:  5'- gGCccgGCGUCgGCUaCCuggGCCGCGCCu -3'
miRNA:   3'- -CGa--CGCGGaCGA-GGuagCGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 78851 0.66 0.609885
Target:  5'- gGCgGCGCCcGCcgCCGgagcgcgaGCCGCGUCa -3'
miRNA:   3'- -CGaCGCGGaCGa-GGUag------CGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 19639 0.66 0.609885
Target:  5'- --aGCGCgaGCUCCGcggcggCgGCgCGCGCCGc -3'
miRNA:   3'- cgaCGCGgaCGAGGUa-----G-CG-GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 63341 0.66 0.609885
Target:  5'- cGCggGcCGCC-GaCUCCGcCGCCGCcGCCGc -3'
miRNA:   3'- -CGa-C-GCGGaC-GAGGUaGCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 43562 0.66 0.609885
Target:  5'- --aGCGCCUcagggggaaugaGCUCgCGgagccgcauguUCGCgCGCGCCGa -3'
miRNA:   3'- cgaCGCGGA------------CGAG-GU-----------AGCG-GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 119820 0.66 0.609885
Target:  5'- uCUGCGCUgggGuCUCCGagGCCcGCGuCCGc -3'
miRNA:   3'- cGACGCGGa--C-GAGGUagCGG-CGC-GGC- -5'
23568 5' -62.2 NC_005261.1 + 48644 0.66 0.609885
Target:  5'- cCUGCGCCggcccccGC-CCGgagaGCCGCGCgGc -3'
miRNA:   3'- cGACGCGGa------CGaGGUag--CGGCGCGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.