Results 41 - 60 of 589 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23568 | 5' | -62.2 | NC_005261.1 | + | 31680 | 0.66 | 0.619775 |
Target: 5'- cGC-GCGCCgGC-CCGgacgCgGCCGCcGCCGa -3' miRNA: 3'- -CGaCGCGGaCGaGGUa---G-CGGCG-CGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 39949 | 0.66 | 0.619775 |
Target: 5'- cGCggacGCGCCggGCgUCgAaCGCgCGCGCCGc -3' miRNA: 3'- -CGa---CGCGGa-CG-AGgUaGCG-GCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 61354 | 0.66 | 0.619775 |
Target: 5'- aGC-GUGCCgucgGcCUCC-UCGCCggGCGCCa -3' miRNA: 3'- -CGaCGCGGa---C-GAGGuAGCGG--CGCGGc -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 2737 | 0.66 | 0.619775 |
Target: 5'- gGCUGagGCCaGCgcgUCCAucagguucUCGCCGCGCa- -3' miRNA: 3'- -CGACg-CGGaCG---AGGU--------AGCGGCGCGgc -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 56947 | 0.66 | 0.619775 |
Target: 5'- uGC-GCGCCgcGCUCCGgcucgCGCagGCgGCCGg -3' miRNA: 3'- -CGaCGCGGa-CGAGGUa----GCGg-CG-CGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 67584 | 0.66 | 0.619775 |
Target: 5'- cGCgGCGCCgaacCUCag-CGCCGCGgCGc -3' miRNA: 3'- -CGaCGCGGac--GAGguaGCGGCGCgGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 34031 | 0.66 | 0.619775 |
Target: 5'- cGCgaGCGCCUGgacgCCGUC-CCGC-CCGa -3' miRNA: 3'- -CGa-CGCGGACga--GGUAGcGGCGcGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 94594 | 0.66 | 0.618785 |
Target: 5'- --cGCGCCcuccGC-CCAcgagcgcgcgcccUCGCCGCcGCCGg -3' miRNA: 3'- cgaCGCGGa---CGaGGU-------------AGCGGCG-CGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 103250 | 0.66 | 0.618785 |
Target: 5'- cGC-GCGCCcGCgUCCG-CGCacagccgcuccagCGCGCCGg -3' miRNA: 3'- -CGaCGCGGaCG-AGGUaGCG-------------GCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 78851 | 0.66 | 0.609885 |
Target: 5'- gGCgGCGCCcGCcgCCGgagcgcgaGCCGCGUCa -3' miRNA: 3'- -CGaCGCGGaCGa-GGUag------CGGCGCGGc -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 88841 | 0.66 | 0.609885 |
Target: 5'- gGCccgGCGUCgGCUaCCuggGCCGCGCCu -3' miRNA: 3'- -CGa--CGCGGaCGA-GGuagCGGCGCGGc -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 119820 | 0.66 | 0.609885 |
Target: 5'- uCUGCGCUgggGuCUCCGagGCCcGCGuCCGc -3' miRNA: 3'- cGACGCGGa--C-GAGGUagCGG-CGC-GGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 43562 | 0.66 | 0.609885 |
Target: 5'- --aGCGCCUcagggggaaugaGCUCgCGgagccgcauguUCGCgCGCGCCGa -3' miRNA: 3'- cgaCGCGGA------------CGAG-GU-----------AGCG-GCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 19639 | 0.66 | 0.609885 |
Target: 5'- --aGCGCgaGCUCCGcggcggCgGCgCGCGCCGc -3' miRNA: 3'- cgaCGCGgaCGAGGUa-----G-CG-GCGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 63341 | 0.66 | 0.609885 |
Target: 5'- cGCggGcCGCC-GaCUCCGcCGCCGCcGCCGc -3' miRNA: 3'- -CGa-C-GCGGaC-GAGGUaGCGGCG-CGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 124049 | 0.66 | 0.609885 |
Target: 5'- cCUGgGCCUGa-CCcgCGCCccgagacgcGCGCCGu -3' miRNA: 3'- cGACgCGGACgaGGuaGCGG---------CGCGGC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 40603 | 0.66 | 0.609885 |
Target: 5'- --cGCGCCcGCUCCGccCGCUcCGCCc -3' miRNA: 3'- cgaCGCGGaCGAGGUa-GCGGcGCGGc -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 89099 | 0.66 | 0.609885 |
Target: 5'- cCUGCGCgCgggGgUCCcgccCGCCGCGCuCGa -3' miRNA: 3'- cGACGCG-Ga--CgAGGua--GCGGCGCG-GC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 47071 | 0.66 | 0.609885 |
Target: 5'- aGCUGcCGCCcGggCCAcUCGCCGgGCgGc -3' miRNA: 3'- -CGAC-GCGGaCgaGGU-AGCGGCgCGgC- -5' |
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23568 | 5' | -62.2 | NC_005261.1 | + | 48644 | 0.66 | 0.609885 |
Target: 5'- cCUGCGCCggcccccGC-CCGgagaGCCGCGCgGc -3' miRNA: 3'- cGACGCGGa------CGaGGUag--CGGCGCGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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