miRNA display CGI


Results 1 - 20 of 589 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 5' -62.2 NC_005261.1 + 4409 0.66 0.629673
Target:  5'- gGCgGCGCgCUGCcgggCCAg-GCCuCGCCGg -3'
miRNA:   3'- -CGaCGCG-GACGa---GGUagCGGcGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 24886 0.66 0.629673
Target:  5'- aCUGCGCgUUGUacagCCcgUGCCGCGCg- -3'
miRNA:   3'- cGACGCG-GACGa---GGuaGCGGCGCGgc -5'
23568 5' -62.2 NC_005261.1 + 19453 0.66 0.629673
Target:  5'- aGC-GCGCCgucUGCagCGUCGgCGCGCgCGu -3'
miRNA:   3'- -CGaCGCGG---ACGagGUAGCgGCGCG-GC- -5'
23568 5' -62.2 NC_005261.1 + 18565 0.66 0.629673
Target:  5'- --cGCGCUggaaccagaGCUCCAg-GCgCGCGCCGc -3'
miRNA:   3'- cgaCGCGGa--------CGAGGUagCG-GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 7462 0.66 0.629673
Target:  5'- cGCgggGCGCCagcUGCUCCGUgGUuaccagcagCGCGgCGa -3'
miRNA:   3'- -CGa--CGCGG---ACGAGGUAgCG---------GCGCgGC- -5'
23568 5' -62.2 NC_005261.1 + 84659 0.66 0.629673
Target:  5'- gGCUgGCGCCgcccGCgCCcgCgGCCGCGCa- -3'
miRNA:   3'- -CGA-CGCGGa---CGaGGuaG-CGGCGCGgc -5'
23568 5' -62.2 NC_005261.1 + 108926 0.66 0.629673
Target:  5'- gGCgGCGCgCUGCcgggCCAg-GCCuCGCCGg -3'
miRNA:   3'- -CGaCGCG-GACGa---GGUagCGGcGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 73353 0.66 0.629673
Target:  5'- cGCccgGCGCCgGCUCag--GCgGCGCCa -3'
miRNA:   3'- -CGa--CGCGGaCGAGguagCGgCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 101275 0.66 0.629673
Target:  5'- uCUGCGCCgcgcgGCgggCCuugCGCCaGCGCa- -3'
miRNA:   3'- cGACGCGGa----CGa--GGua-GCGG-CGCGgc -5'
23568 5' -62.2 NC_005261.1 + 123958 0.66 0.629673
Target:  5'- cGCaGCGCCcGCUCCG-CGa-GCGCUa -3'
miRNA:   3'- -CGaCGCGGaCGAGGUaGCggCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 34352 0.66 0.629673
Target:  5'- gGC-GCGCCgcccgGCggcgCCGcccCGCCGCcGCCGc -3'
miRNA:   3'- -CGaCGCGGa----CGa---GGUa--GCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 61529 0.66 0.629673
Target:  5'- --cGgGCCUuCUCCGgcaagCGCCGCGgCGc -3'
miRNA:   3'- cgaCgCGGAcGAGGUa----GCGGCGCgGC- -5'
23568 5' -62.2 NC_005261.1 + 118396 0.66 0.629673
Target:  5'- cGCUgGCgGCCgcggGCgCCGcaGCCGCGCUGg -3'
miRNA:   3'- -CGA-CG-CGGa---CGaGGUagCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 9715 0.66 0.629673
Target:  5'- aGCcGCcaggaGgCUGcCUCCGcCGCCGCGUCGa -3'
miRNA:   3'- -CGaCG-----CgGAC-GAGGUaGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 11290 0.66 0.629673
Target:  5'- --cGCGCCcgGCgcCCcUgGCCGCGCUGc -3'
miRNA:   3'- cgaCGCGGa-CGa-GGuAgCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 71120 0.66 0.629673
Target:  5'- aGCuUGCGCCcGCgcgCCAcgaCGCUcucaaGCGCCGc -3'
miRNA:   3'- -CG-ACGCGGaCGa--GGUa--GCGG-----CGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 93320 0.66 0.629673
Target:  5'- gGCUGgGCCcgGCgugggUCCGUCGUaCGCcCCGg -3'
miRNA:   3'- -CGACgCGGa-CG-----AGGUAGCG-GCGcGGC- -5'
23568 5' -62.2 NC_005261.1 + 94451 0.66 0.629673
Target:  5'- cGCgGCGCC--CUCCGcgCGCCGCcCCa -3'
miRNA:   3'- -CGaCGCGGacGAGGUa-GCGGCGcGGc -5'
23568 5' -62.2 NC_005261.1 + 39199 0.66 0.629673
Target:  5'- cGCggGUGCUguggGCgCgCGcCGCCGCGCCGc -3'
miRNA:   3'- -CGa-CGCGGa---CGaG-GUaGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 12224 0.66 0.626703
Target:  5'- nGCUGCuGCC-GCcCCAugcgcaucagaaacUCGCC-CGCCGu -3'
miRNA:   3'- -CGACG-CGGaCGaGGU--------------AGCGGcGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.