miRNA display CGI


Results 61 - 80 of 589 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23568 5' -62.2 NC_005261.1 + 132385 0.66 0.619775
Target:  5'- cGCgGCG-CUGUUCCccGagGCCGCcGCCGa -3'
miRNA:   3'- -CGaCGCgGACGAGG--UagCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 34031 0.66 0.619775
Target:  5'- cGCgaGCGCCUGgacgCCGUC-CCGC-CCGa -3'
miRNA:   3'- -CGa-CGCGGACga--GGUAGcGGCGcGGC- -5'
23568 5' -62.2 NC_005261.1 + 1155 0.66 0.580335
Target:  5'- cCUGCGCCgccauggGUgCCcgCGCCuccGCGCCu -3'
miRNA:   3'- cGACGCGGa------CGaGGuaGCGG---CGCGGc -5'
23568 5' -62.2 NC_005261.1 + 87371 0.66 0.580335
Target:  5'- gGCgaagGCGCCgaccuggGCgagCCAcaggcgccagcUCGCgGCGCCa -3'
miRNA:   3'- -CGa---CGCGGa------CGa--GGU-----------AGCGgCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 98337 0.66 0.580335
Target:  5'- cGC-GCGCCaGCUgCAcaGCCGCGCgCGc -3'
miRNA:   3'- -CGaCGCGGaCGAgGUagCGGCGCG-GC- -5'
23568 5' -62.2 NC_005261.1 + 56947 0.66 0.619775
Target:  5'- uGC-GCGCCgcGCUCCGgcucgCGCagGCgGCCGg -3'
miRNA:   3'- -CGaCGCGGa-CGAGGUa----GCGg-CG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 117054 0.66 0.599025
Target:  5'- cGCUcGCGCCagcgGCUgCAUCucugcucggcaggGCCGUGCUa -3'
miRNA:   3'- -CGA-CGCGGa---CGAgGUAG-------------CGGCGCGGc -5'
23568 5' -62.2 NC_005261.1 + 47071 0.66 0.609885
Target:  5'- aGCUGcCGCCcGggCCAcUCGCCGgGCgGc -3'
miRNA:   3'- -CGAC-GCGGaCgaGGU-AGCGGCgCGgC- -5'
23568 5' -62.2 NC_005261.1 + 44997 0.66 0.580335
Target:  5'- gGCgacgGCgGCC-GCUUUuUUGCCGCGCUGg -3'
miRNA:   3'- -CGa---CG-CGGaCGAGGuAGCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 34352 0.66 0.629673
Target:  5'- gGC-GCGCCgcccgGCggcgCCGcccCGCCGCcGCCGc -3'
miRNA:   3'- -CGaCGCGGa----CGa---GGUa--GCGGCG-CGGC- -5'
23568 5' -62.2 NC_005261.1 + 19639 0.66 0.609885
Target:  5'- --aGCGCgaGCUCCGcggcggCgGCgCGCGCCGc -3'
miRNA:   3'- cgaCGCGgaCGAGGUa-----G-CG-GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 39949 0.66 0.619775
Target:  5'- cGCggacGCGCCggGCgUCgAaCGCgCGCGCCGc -3'
miRNA:   3'- -CGa---CGCGGa-CG-AGgUaGCG-GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 51264 0.66 0.588192
Target:  5'- uGCUGcCGCCggacgugUGCUucacggucuuugaCCAgccCGCCGCGCgCGg -3'
miRNA:   3'- -CGAC-GCGG-------ACGA-------------GGUa--GCGGCGCG-GC- -5'
23568 5' -62.2 NC_005261.1 + 136387 0.66 0.590159
Target:  5'- --cGgGCCcgGCgCCuUCGCgCGCGCCGa -3'
miRNA:   3'- cgaCgCGGa-CGaGGuAGCG-GCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 31820 0.66 0.600011
Target:  5'- --cGCgGCCcGCUgCAgCGCCGCGCgGa -3'
miRNA:   3'- cgaCG-CGGaCGAgGUaGCGGCGCGgC- -5'
23568 5' -62.2 NC_005261.1 + 107947 0.66 0.600997
Target:  5'- cGC-GgGCCaGCgUCCAggcgggcgcgcgggcCGCCGCGCCGc -3'
miRNA:   3'- -CGaCgCGGaCG-AGGUa--------------GCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 8311 0.66 0.620765
Target:  5'- aGCUGCcCCUcacccuCUCCucccccgacccgcgCGCCGUGCCGg -3'
miRNA:   3'- -CGACGcGGAc-----GAGGua------------GCGGCGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 12224 0.66 0.626703
Target:  5'- nGCUGCuGCC-GCcCCAugcgcaucagaaacUCGCC-CGCCGu -3'
miRNA:   3'- -CGACG-CGGaCGaGGU--------------AGCGGcGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 70538 0.66 0.619775
Target:  5'- gGCgGCGCCcGCgccCCAccCGCCgcaggGCGCCGc -3'
miRNA:   3'- -CGaCGCGGaCGa--GGUa-GCGG-----CGCGGC- -5'
23568 5' -62.2 NC_005261.1 + 19453 0.66 0.629673
Target:  5'- aGC-GCGCCgucUGCagCGUCGgCGCGCgCGu -3'
miRNA:   3'- -CGaCGCGG---ACGagGUAGCgGCGCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.