miRNA display CGI


Results 61 - 80 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 3' -64.7 NC_005261.1 + 38604 0.67 0.39428
Target:  5'- -cCCGCGG-CUGGcGGGUGUUgGCCGc -3'
miRNA:   3'- guGGCGCCgGACC-CCCGCGAaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 118367 0.67 0.386151
Target:  5'- gGCCG-GGCgCUGGGGcGCGCggcCCGAg -3'
miRNA:   3'- gUGGCgCCG-GACCCC-CGCGaacGGUU- -5'
23569 3' -64.7 NC_005261.1 + 5487 0.66 0.46311
Target:  5'- --gCGCGcGCCgGGGGGUaGCUgggGCCGc -3'
miRNA:   3'- gugGCGC-CGGaCCCCCG-CGAa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 71230 0.66 0.454157
Target:  5'- gCGCaCGCGGCCcucGGcGGCGCa-GCCGAg -3'
miRNA:   3'- -GUG-GCGCCGGac-CC-CCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 103599 0.66 0.441783
Target:  5'- cCGCCGUGGCCgcggcggcagcgcGGGaGGCGgCggcgGCCAu -3'
miRNA:   3'- -GUGGCGCCGGa------------CCC-CCGC-Gaa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 34922 0.66 0.436538
Target:  5'- gGgCGCGGCCacgcgGGGGGCG---GCCGg -3'
miRNA:   3'- gUgGCGCCGGa----CCCCCGCgaaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 14694 0.66 0.427877
Target:  5'- gAUgGUGGCgaggGGGGGCGCcuucgGCCGAg -3'
miRNA:   3'- gUGgCGCCGga--CCCCCGCGaa---CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 30042 0.66 0.427877
Target:  5'- gGCCGCGGCCUGccGGcCGCg-GCCu- -3'
miRNA:   3'- gUGGCGCCGGACccCC-GCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 100184 0.66 0.419319
Target:  5'- aCGCCGUGGCg-GcGGGGCaGCguggcgGCCAGc -3'
miRNA:   3'- -GUGGCGCCGgaC-CCCCG-CGaa----CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 120415 0.67 0.414234
Target:  5'- gCGCUgaGCGGCCUGGGcuggugaacaugcgcGGCGUgcGCCu- -3'
miRNA:   3'- -GUGG--CGCCGGACCC---------------CCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 97089 0.69 0.278002
Target:  5'- gCGCCGgcugGGCC-GGGGGCGCcaGCCg- -3'
miRNA:   3'- -GUGGCg---CCGGaCCCCCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 118190 0.69 0.284398
Target:  5'- gGCCGCGggccccgcGCCUGccgcgcugcgcGGGGCGCUgacgGCCGc -3'
miRNA:   3'- gUGGCGC--------CGGAC-----------CCCCGCGAa---CGGUu -5'
23569 3' -64.7 NC_005261.1 + 22756 0.67 0.378134
Target:  5'- gGCgGCGGCCcacgcgucUGGGGGCGg--GCCc- -3'
miRNA:   3'- gUGgCGCCGG--------ACCCCCGCgaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 31306 0.68 0.362438
Target:  5'- cCGCCGCgcggGGCCcGcGGGcGCGCUcGCCGc -3'
miRNA:   3'- -GUGGCG----CCGGaC-CCC-CGCGAaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 51926 0.68 0.347201
Target:  5'- gGCCGCGGCCUGGuccCGCUcgucGCCGg -3'
miRNA:   3'- gUGGCGCCGGACCcccGCGAa---CGGUu -5'
23569 3' -64.7 NC_005261.1 + 81373 0.68 0.347201
Target:  5'- gCGCCG-GGCucgCUGGGGGCGCcggGCUc- -3'
miRNA:   3'- -GUGGCgCCG---GACCCCCGCGaa-CGGuu -5'
23569 3' -64.7 NC_005261.1 + 102316 0.68 0.332427
Target:  5'- gCGCCGCGGCCgc--GGCGCgcaGCCGc -3'
miRNA:   3'- -GUGGCGCCGGacccCCGCGaa-CGGUu -5'
23569 3' -64.7 NC_005261.1 + 103861 0.68 0.31812
Target:  5'- aGCCGCGGCggcggcgGGGcGGCGCc-GCCGGg -3'
miRNA:   3'- gUGGCGCCGga-----CCC-CCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 49162 0.69 0.304281
Target:  5'- cCGCaaagGCGGCCacgGcGGGGUGCUcgGCCAGg -3'
miRNA:   3'- -GUGg---CGCCGGa--C-CCCCGCGAa-CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 61036 0.69 0.297537
Target:  5'- gCACCGCGGCagCUGGcuGGUGCUggGCCu- -3'
miRNA:   3'- -GUGGCGCCG--GACCc-CCGCGAa-CGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.