miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 3' -64.7 NC_005261.1 + 126937 0.66 0.445299
Target:  5'- gCAgCGCGGCCa-GGGGCGCcggGCgCGGg -3'
miRNA:   3'- -GUgGCGCCGGacCCCCGCGaa-CG-GUU- -5'
23569 3' -64.7 NC_005261.1 + 101344 0.66 0.445299
Target:  5'- gCGCCuuGGCgaGGaaGGGCGCggGCCAGc -3'
miRNA:   3'- -GUGGcgCCGgaCC--CCCGCGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 30727 0.66 0.445299
Target:  5'- uCGgCGCGGCCUGcGuGGCGCagcugcUGCCGc -3'
miRNA:   3'- -GUgGCGCCGGACcC-CCGCGa-----ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 68979 0.66 0.445299
Target:  5'- cCACCGCGGCCcuuuucGGGccGCGCgggcGCCGc -3'
miRNA:   3'- -GUGGCGCCGGa-----CCCc-CGCGaa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 68171 0.66 0.445299
Target:  5'- gGCCGgGGCgCUGGucGCGggUGCCAc -3'
miRNA:   3'- gUGGCgCCG-GACCccCGCgaACGGUu -5'
23569 3' -64.7 NC_005261.1 + 67684 0.66 0.445299
Target:  5'- gCGCCcuGCGGCggGuGGGGCGCgggcGCCGc -3'
miRNA:   3'- -GUGG--CGCCGgaC-CCCCGCGaa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 89461 0.66 0.443539
Target:  5'- uCGCCGagcucgucgGGCCgcccgGGGGGCGCgacuacgcgcagUGCCu- -3'
miRNA:   3'- -GUGGCg--------CCGGa----CCCCCGCGa-----------ACGGuu -5'
23569 3' -64.7 NC_005261.1 + 17178 0.66 0.441783
Target:  5'- aCACCGCGcGCCacaaccgcgacgugUGGcGGCGCUUcucccgcGCCAGc -3'
miRNA:   3'- -GUGGCGC-CGG--------------ACCcCCGCGAA-------CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 103599 0.66 0.441783
Target:  5'- cCGCCGUGGCCgcggcggcagcgcGGGaGGCGgCggcgGCCAu -3'
miRNA:   3'- -GUGGCGCCGGa------------CCC-CCGC-Gaa--CGGUu -5'
23569 3' -64.7 NC_005261.1 + 106017 0.66 0.436538
Target:  5'- cCGCCGCGGCC-GGcagcucgucGGGCGCcaGCUc- -3'
miRNA:   3'- -GUGGCGCCGGaCC---------CCCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 83848 0.66 0.436538
Target:  5'- gGCCGCGGCCccgcUGGgcuGGGC-CggGCCGGa -3'
miRNA:   3'- gUGGCGCCGG----ACC---CCCGcGaaCGGUU- -5'
23569 3' -64.7 NC_005261.1 + 1500 0.66 0.436538
Target:  5'- cCGCCGCGGCC-GGcagcucgucGGGCGCcaGCUc- -3'
miRNA:   3'- -GUGGCGCCGGaCC---------CCCGCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 34922 0.66 0.436538
Target:  5'- gGgCGCGGCCacgcgGGGGGCG---GCCGg -3'
miRNA:   3'- gUgGCGCCGGa----CCCCCGCgaaCGGUu -5'
23569 3' -64.7 NC_005261.1 + 28480 0.66 0.435667
Target:  5'- aCGCgGCGGCC-GGGagccgcauucgcaGGUGgUUGCCGAu -3'
miRNA:   3'- -GUGgCGCCGGaCCC-------------CCGCgAACGGUU- -5'
23569 3' -64.7 NC_005261.1 + 37558 0.66 0.427877
Target:  5'- cCGCCGCcGCCaccGGGGUGCguccUGCCGc -3'
miRNA:   3'- -GUGGCGcCGGac-CCCCGCGa---ACGGUu -5'
23569 3' -64.7 NC_005261.1 + 23026 0.66 0.427877
Target:  5'- gCGCCGCGGaCgcacGGGCGCUggGCCGu -3'
miRNA:   3'- -GUGGCGCCgGacc-CCCGCGAa-CGGUu -5'
23569 3' -64.7 NC_005261.1 + 134560 0.66 0.427877
Target:  5'- gGCCGCGGCCUGccGGcCGCg-GCCu- -3'
miRNA:   3'- gUGGCGCCGGACccCC-GCGaaCGGuu -5'
23569 3' -64.7 NC_005261.1 + 40416 0.66 0.427877
Target:  5'- uGCCGCcGUCUgcGGGGGCGCcgGCgGAc -3'
miRNA:   3'- gUGGCGcCGGA--CCCCCGCGaaCGgUU- -5'
23569 3' -64.7 NC_005261.1 + 69948 0.66 0.427877
Target:  5'- -cCCGCGGCCgGGgccccgccgcgcGGGCGCaggcgcGCCAGg -3'
miRNA:   3'- guGGCGCCGGaCC------------CCCGCGaa----CGGUU- -5'
23569 3' -64.7 NC_005261.1 + 114537 0.66 0.427877
Target:  5'- gACCGggcgGGCCUcgcgucGGGGGCGCUcGCUc- -3'
miRNA:   3'- gUGGCg---CCGGA------CCCCCGCGAaCGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.