miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 5' -50.9 NC_005261.1 + 87253 0.67 0.973421
Target:  5'- cGCCGUCGGccgagagguuucGCGcG-CCGUAgucGACCACg -3'
miRNA:   3'- aCGGCAGUU------------CGCaCaGGUAU---UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 107891 0.67 0.970494
Target:  5'- gGCCG-CGAGCGcGgCCGccAGCCGCg -3'
miRNA:   3'- aCGGCaGUUCGCaCaGGUauUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 48640 0.67 0.970494
Target:  5'- aGCCGUCGAGuCGcGcgUCGUAGACgGCc -3'
miRNA:   3'- aCGGCAGUUC-GCaCa-GGUAUUUGgUG- -5'
23569 5' -50.9 NC_005261.1 + 20246 0.67 0.970494
Target:  5'- cGCCGUCAGGCcgGUGUgcgcgcCCAUGgcagcGAgCGCg -3'
miRNA:   3'- aCGGCAGUUCG--CACA------GGUAU-----UUgGUG- -5'
23569 5' -50.9 NC_005261.1 + 83244 0.67 0.969572
Target:  5'- gGCCG-CcGGCGUGgCCGUAAagaccuuugcgaguGCCGCc -3'
miRNA:   3'- aCGGCaGuUCGCACaGGUAUU--------------UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 69411 0.68 0.967342
Target:  5'- gGCCGccacggccCAGGCGUuguggGUCCGcgggaUGAGCCGCa -3'
miRNA:   3'- aCGGCa-------GUUCGCA-----CAGGU-----AUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 70009 0.68 0.96396
Target:  5'- cGCCGUCAGG-GUcgCCGUugucGGCCGCg -3'
miRNA:   3'- aCGGCAGUUCgCAcaGGUAu---UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 107002 0.68 0.956477
Target:  5'- gGCuCGgggaaGAGCGggugGUCCGcGAGCCGCg -3'
miRNA:   3'- aCG-GCag---UUCGCa---CAGGUaUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 92144 0.68 0.956477
Target:  5'- gGCCGUaCGugcuCGUGUCCG---GCCACg -3'
miRNA:   3'- aCGGCA-GUuc--GCACAGGUauuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 80679 0.68 0.952365
Target:  5'- aGCCGggcgcgugCGAcGUGUGcCCGUGcGCCGCg -3'
miRNA:   3'- aCGGCa-------GUU-CGCACaGGUAUuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 88539 0.69 0.943378
Target:  5'- cGCCuacGUCAAGC----CCAUGGGCCACg -3'
miRNA:   3'- aCGG---CAGUUCGcacaGGUAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 109775 0.66 0.991076
Target:  5'- cGCCGUCucGgGcGUCCc--GGCCGCu -3'
miRNA:   3'- aCGGCAGuuCgCaCAGGuauUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 70873 0.66 0.989777
Target:  5'- cGCCGU--GGCGUGgCCGgcgGugCACa -3'
miRNA:   3'- aCGGCAguUCGCACaGGUau-UugGUG- -5'
23569 5' -50.9 NC_005261.1 + 12620 0.66 0.989777
Target:  5'- cGCCGcCAccacGGUGUaGUCCGgcgcggucugGGGCCGCg -3'
miRNA:   3'- aCGGCaGU----UCGCA-CAGGUa---------UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 103883 0.66 0.988334
Target:  5'- cGCCGcCGGGCGgcgcgCCAagccGGGCCACc -3'
miRNA:   3'- aCGGCaGUUCGCaca--GGUa---UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 67078 0.66 0.988334
Target:  5'- gGCuCGcUCGGGCG-GUCCAUGGcGCgACg -3'
miRNA:   3'- aCG-GC-AGUUCGCaCAGGUAUU-UGgUG- -5'
23569 5' -50.9 NC_005261.1 + 65553 0.66 0.988334
Target:  5'- aGCgCGUgcCAGGCG--UCCAUGAaguGCCGCa -3'
miRNA:   3'- aCG-GCA--GUUCGCacAGGUAUU---UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 63651 0.66 0.988334
Target:  5'- aGCCGUCc-GCGUccCCGUucACCAUg -3'
miRNA:   3'- aCGGCAGuuCGCAcaGGUAuuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 53049 0.66 0.988334
Target:  5'- aGCCGUCGGGagggcaGUGcUCCAccccgGGGCgGCg -3'
miRNA:   3'- aCGGCAGUUCg-----CAC-AGGUa----UUUGgUG- -5'
23569 5' -50.9 NC_005261.1 + 68509 0.66 0.988334
Target:  5'- cGCUGaugCAGGCGUGccugCCGgc-GCCGCc -3'
miRNA:   3'- aCGGCa--GUUCGCACa---GGUauuUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.