miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 5' -50.9 NC_005261.1 + 31750 0.69 0.948
Target:  5'- gGCCGUCGGGCaggcgcacGUGUaCCugcgcGCCGCg -3'
miRNA:   3'- aCGGCAGUUCG--------CACA-GGuauu-UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 136267 0.69 0.948
Target:  5'- gGCCGUCGGGCaggcgcacGUGUaCCugcgcGCCGCg -3'
miRNA:   3'- aCGGCAGUUCG--------CACA-GGuauu-UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 18599 0.69 0.948
Target:  5'- aGCCGUgCGAG-GUGUCCGUcgcgcgcgccgAAAuCCGCg -3'
miRNA:   3'- aCGGCA-GUUCgCACAGGUA-----------UUU-GGUG- -5'
23569 5' -50.9 NC_005261.1 + 68240 0.68 0.952365
Target:  5'- cGgCGg-GGGCGUGUUCGUGGACUGCc -3'
miRNA:   3'- aCgGCagUUCGCACAGGUAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 73878 0.68 0.952365
Target:  5'- gGUCGU-GGGCGUGUCCcUGAGCUuCg -3'
miRNA:   3'- aCGGCAgUUCGCACAGGuAUUUGGuG- -5'
23569 5' -50.9 NC_005261.1 + 80679 0.68 0.952365
Target:  5'- aGCCGggcgcgugCGAcGUGUGcCCGUGcGCCGCg -3'
miRNA:   3'- aCGGCa-------GUU-CGCACaGGUAUuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 57580 0.68 0.956477
Target:  5'- cGCCGcgUUGAGCGcGUCgAUGuGCCACc -3'
miRNA:   3'- aCGGC--AGUUCGCaCAGgUAUuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 107002 0.68 0.956477
Target:  5'- gGCuCGgggaaGAGCGggugGUCCGcGAGCCGCg -3'
miRNA:   3'- aCG-GCag---UUCGCa---CAGGUaUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 92144 0.68 0.956477
Target:  5'- gGCCGUaCGugcuCGUGUCCG---GCCACg -3'
miRNA:   3'- aCGGCA-GUuc--GCACAGGUauuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 73360 0.68 0.956477
Target:  5'- cGCCGgcUCAGGCGgcgCCAgcagcgcGGCCACg -3'
miRNA:   3'- aCGGC--AGUUCGCacaGGUau-----UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 2485 0.68 0.956477
Target:  5'- gGCuCGgggaaGAGCGggugGUCCGcGAGCCGCg -3'
miRNA:   3'- aCG-GCag---UUCGCa---CAGGUaUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 71678 0.68 0.96034
Target:  5'- cGCaCGUCGgcgucugcgGGCGUGaCCAUGAACUcCa -3'
miRNA:   3'- aCG-GCAGU---------UCGCACaGGUAUUUGGuG- -5'
23569 5' -50.9 NC_005261.1 + 104189 0.68 0.96396
Target:  5'- gGUCGUCGGGCGggacggcGUCCAggcGCuCGCg -3'
miRNA:   3'- aCGGCAGUUCGCa------CAGGUauuUG-GUG- -5'
23569 5' -50.9 NC_005261.1 + 103793 0.68 0.96396
Target:  5'- gGCCGUCuucGGUGUGcgCCGUugcgcccGCCGCc -3'
miRNA:   3'- aCGGCAGu--UCGCACa-GGUAuu-----UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 70009 0.68 0.96396
Target:  5'- cGCCGUCAGG-GUcgCCGUugucGGCCGCg -3'
miRNA:   3'- aCGGCAGUUCgCAcaGGUAu---UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 69411 0.68 0.967342
Target:  5'- gGCCGccacggccCAGGCGUuguggGUCCGcgggaUGAGCCGCa -3'
miRNA:   3'- aCGGCa-------GUUCGCA-----CAGGU-----AUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 80418 0.68 0.967342
Target:  5'- cGCCGagagCGAGCGgg-CCGUAAagcggaaguuACCGCg -3'
miRNA:   3'- aCGGCa---GUUCGCacaGGUAUU----------UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 14043 0.68 0.967342
Target:  5'- gGCCaugCGAGCG-GUCCGcaggcAGGCCGCg -3'
miRNA:   3'- aCGGca-GUUCGCaCAGGUa----UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 83244 0.67 0.969572
Target:  5'- gGCCG-CcGGCGUGgCCGUAAagaccuuugcgaguGCCGCc -3'
miRNA:   3'- aCGGCaGuUCGCACaGGUAUU--------------UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 127039 0.67 0.970189
Target:  5'- aGUCGUCGaacgccucgauGGCGUcguacggGUCCAUGGuGCCGCc -3'
miRNA:   3'- aCGGCAGU-----------UCGCA-------CAGGUAUU-UGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.