miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 5' -50.9 NC_005261.1 + 57913 0.71 0.890002
Target:  5'- cGCgGUCGAGCGcGUcuaCCGUGAgcgcuucaacGCCACg -3'
miRNA:   3'- aCGgCAGUUCGCaCA---GGUAUU----------UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 132312 0.7 0.896972
Target:  5'- uUGCCGUCGAGCGagcuagCCAgccGGCCGg -3'
miRNA:   3'- -ACGGCAGUUCGCaca---GGUau-UUGGUg -5'
23569 5' -50.9 NC_005261.1 + 27795 0.7 0.896972
Target:  5'- uUGCCGUCGAGCGagcuagCCAgccGGCCGg -3'
miRNA:   3'- -ACGGCAGUUCGCaca---GGUau-UUGGUg -5'
23569 5' -50.9 NC_005261.1 + 93100 0.7 0.903687
Target:  5'- gGCCGUCGAGCGUcagcaucagcgcGcCCGUGcccggcuCCACg -3'
miRNA:   3'- aCGGCAGUUCGCA------------CaGGUAUuu-----GGUG- -5'
23569 5' -50.9 NC_005261.1 + 118250 0.7 0.910144
Target:  5'- cGCCGUCugcGGCGUGcCgGUGcACUGCg -3'
miRNA:   3'- aCGGCAGu--UCGCACaGgUAUuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 85148 0.7 0.910144
Target:  5'- gUGCCuUCcuGCG-GUCCGUGcGCCGCc -3'
miRNA:   3'- -ACGGcAGuuCGCaCAGGUAUuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 119227 0.7 0.916341
Target:  5'- cUGCCGgggCGAGCGUGgCCGaucgcGGCCAUc -3'
miRNA:   3'- -ACGGCa--GUUCGCACaGGUau---UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 58126 0.7 0.916341
Target:  5'- aGCCuGcCGAGCGUGgCCAcc-GCCACg -3'
miRNA:   3'- aCGG-CaGUUCGCACaGGUauuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 118163 0.7 0.922275
Target:  5'- gGCCGUCGcGGCGgGgcuugCCGUcuGGGCCGCg -3'
miRNA:   3'- aCGGCAGU-UCGCaCa----GGUA--UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 123402 0.69 0.927946
Target:  5'- cUGCCGUgCucccGGCGcaUCUAUAAGCCGCg -3'
miRNA:   3'- -ACGGCA-Gu---UCGCacAGGUAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 42846 0.69 0.933353
Target:  5'- gGCCG-CGAGCGgcgcgCCGggGGGCCGCg -3'
miRNA:   3'- aCGGCaGUUCGCaca--GGUa-UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 133161 0.69 0.938496
Target:  5'- cGCCGUC-GGCGUcgccgCCGacAACCGCg -3'
miRNA:   3'- aCGGCAGuUCGCAca---GGUauUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 11146 0.69 0.94048
Target:  5'- aGCCGUCAuugcggcggcgcggcGGCGgcaCCAUGGACC-Cg -3'
miRNA:   3'- aCGGCAGU---------------UCGCacaGGUAUUUGGuG- -5'
23569 5' -50.9 NC_005261.1 + 87702 0.69 0.941941
Target:  5'- cGCCG-CAAGCaGUgcgagcuuaucgagGUCCAggUGGGCCGCg -3'
miRNA:   3'- aCGGCaGUUCG-CA--------------CAGGU--AUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 63687 0.69 0.941941
Target:  5'- cGCgCGUCAuauacagguucugcGGCGUguugcccagGUCCGUGAGCgGCg -3'
miRNA:   3'- aCG-GCAGU--------------UCGCA---------CAGGUAUUUGgUG- -5'
23569 5' -50.9 NC_005261.1 + 113269 0.69 0.943378
Target:  5'- aUGCCGUUcgacggcuacgaGGGCGUgGUCCucucgcuGCCGCg -3'
miRNA:   3'- -ACGGCAG------------UUCGCA-CAGGuauu---UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 67843 0.69 0.943378
Target:  5'- gGCgCGUCGuGCGUGUC----GGCCACg -3'
miRNA:   3'- aCG-GCAGUuCGCACAGguauUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 88539 0.69 0.943378
Target:  5'- cGCCuacGUCAAGC----CCAUGGGCCACg -3'
miRNA:   3'- aCGG---CAGUUCGcacaGGUAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 88457 0.69 0.947549
Target:  5'- cGCCGcgUGAGCGUGUgggcgggCCGU--GCCGCg -3'
miRNA:   3'- aCGGCa-GUUCGCACA-------GGUAuuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 104391 0.69 0.948
Target:  5'- gGCCGagAGGCGcG-CCAUAAAgCGCg -3'
miRNA:   3'- aCGGCagUUCGCaCaGGUAUUUgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.