miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 5' -50.9 NC_005261.1 + 27795 0.7 0.896972
Target:  5'- uUGCCGUCGAGCGagcuagCCAgccGGCCGg -3'
miRNA:   3'- -ACGGCAGUUCGCaca---GGUau-UUGGUg -5'
23569 5' -50.9 NC_005261.1 + 28231 0.76 0.643867
Target:  5'- cGCCGgCGGGCGUGUCCAcgacGACCu- -3'
miRNA:   3'- aCGGCaGUUCGCACAGGUau--UUGGug -5'
23569 5' -50.9 NC_005261.1 + 29692 0.72 0.834526
Target:  5'- cUGCCG-CAcguggcggccuGCGUGgCCAUGAGCCGCc -3'
miRNA:   3'- -ACGGCaGUu----------CGCACaGGUAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 31750 0.69 0.948
Target:  5'- gGCCGUCGGGCaggcgcacGUGUaCCugcgcGCCGCg -3'
miRNA:   3'- aCGGCAGUUCG--------CACA-GGuauu-UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 36772 0.66 0.98305
Target:  5'- cGCCGcCGgcGGCGcUGgggCCAgcgcUGGACCGCg -3'
miRNA:   3'- aCGGCaGU--UCGC-ACa--GGU----AUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 42846 0.69 0.933353
Target:  5'- gGCCG-CGAGCGgcgcgCCGggGGGCCGCg -3'
miRNA:   3'- aCGGCaGUUCGCaca--GGUa-UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 47010 0.67 0.980937
Target:  5'- cGCCG-CGAuGCGgcgGUCCAgcc-CCGCg -3'
miRNA:   3'- aCGGCaGUU-CGCa--CAGGUauuuGGUG- -5'
23569 5' -50.9 NC_005261.1 + 48640 0.67 0.970494
Target:  5'- aGCCGUCGAGuCGcGcgUCGUAGACgGCc -3'
miRNA:   3'- aCGGCAGUUC-GCaCa-GGUAUUUGgUG- -5'
23569 5' -50.9 NC_005261.1 + 49968 0.66 0.986739
Target:  5'- cGCCGUCGucauccccGGCGccgCCGUcgucccccccGAGCCGCg -3'
miRNA:   3'- aCGGCAGU--------UCGCacaGGUA----------UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 52281 0.67 0.978634
Target:  5'- gGUgGUCAcgacGGCG-GUCCAgccGCCACc -3'
miRNA:   3'- aCGgCAGU----UCGCaCAGGUauuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 53049 0.66 0.988334
Target:  5'- aGCCGUCGGGagggcaGUGcUCCAccccgGGGCgGCg -3'
miRNA:   3'- aCGGCAGUUCg-----CAC-AGGUa----UUUGgUG- -5'
23569 5' -50.9 NC_005261.1 + 54507 0.66 0.988334
Target:  5'- cGCCGUCAAGCuaaacgcgCuCAUGGugCGCu -3'
miRNA:   3'- aCGGCAGUUCGcaca----G-GUAUUugGUG- -5'
23569 5' -50.9 NC_005261.1 + 54977 0.66 0.986739
Target:  5'- cUG-CGUCAccgcgaaccagGGCGaGUCCGUGGGCCGg -3'
miRNA:   3'- -ACgGCAGU-----------UCGCaCAGGUAUUUGGUg -5'
23569 5' -50.9 NC_005261.1 + 56482 0.66 0.988334
Target:  5'- cGCCGUCuu-CGcGUCCGUcuuCCACu -3'
miRNA:   3'- aCGGCAGuucGCaCAGGUAuuuGGUG- -5'
23569 5' -50.9 NC_005261.1 + 57580 0.68 0.956477
Target:  5'- cGCCGcgUUGAGCGcGUCgAUGuGCCACc -3'
miRNA:   3'- aCGGC--AGUUCGCaCAGgUAUuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 57913 0.71 0.890002
Target:  5'- cGCgGUCGAGCGcGUcuaCCGUGAgcgcuucaacGCCACg -3'
miRNA:   3'- aCGgCAGUUCGCaCA---GGUAUU----------UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 58126 0.7 0.916341
Target:  5'- aGCCuGcCGAGCGUGgCCAcc-GCCACg -3'
miRNA:   3'- aCGG-CaGUUCGCACaGGUauuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 60591 0.66 0.98498
Target:  5'- gGCCGUC-GGCGaUGgcgCCGgccaGGGCCAUg -3'
miRNA:   3'- aCGGCAGuUCGC-ACa--GGUa---UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 61137 0.66 0.988334
Target:  5'- gGCCGUCGAGagcaGcGUCCGc--GCCAg -3'
miRNA:   3'- aCGGCAGUUCg---CaCAGGUauuUGGUg -5'
23569 5' -50.9 NC_005261.1 + 61790 0.77 0.579537
Target:  5'- cGCCGUCGGGCGcGUCC----GCCAUg -3'
miRNA:   3'- aCGGCAGUUCGCaCAGGuauuUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.