Results 21 - 40 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23569 | 5' | -50.9 | NC_005261.1 | + | 107942 | 0.66 | 0.98305 |
Target: 5'- cGCCGcCA--CGUaGUCCGUGcgcGGCCGCg -3' miRNA: 3'- aCGGCaGUucGCA-CAGGUAU---UUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 107891 | 0.67 | 0.970494 |
Target: 5'- gGCCG-CGAGCGcGgCCGccAGCCGCg -3' miRNA: 3'- aCGGCaGUUCGCaCaGGUauUUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 107002 | 0.68 | 0.956477 |
Target: 5'- gGCuCGgggaaGAGCGggugGUCCGcGAGCCGCg -3' miRNA: 3'- aCG-GCag---UUCGCa---CAGGUaUUUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 106296 | 0.73 | 0.798199 |
Target: 5'- cGCCGUCGaccucGGCGagcagGUCUuccgucGUGAGCCACg -3' miRNA: 3'- aCGGCAGU-----UCGCa----CAGG------UAUUUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 104663 | 0.67 | 0.980937 |
Target: 5'- cGCUGgCGGGCGUGUgcugcggcagcgCC-UGGGCCACc -3' miRNA: 3'- aCGGCaGUUCGCACA------------GGuAUUUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 104391 | 0.69 | 0.948 |
Target: 5'- gGCCGagAGGCGcG-CCAUAAAgCGCg -3' miRNA: 3'- aCGGCagUUCGCaCaGGUAUUUgGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 104189 | 0.68 | 0.96396 |
Target: 5'- gGUCGUCGGGCGggacggcGUCCAggcGCuCGCg -3' miRNA: 3'- aCGGCAGUUCGCa------CAGGUauuUG-GUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 104067 | 0.67 | 0.976132 |
Target: 5'- gGCCG-CGAGCGcGUCCAgcu-CgGCg -3' miRNA: 3'- aCGGCaGUUCGCaCAGGUauuuGgUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 103883 | 0.66 | 0.988334 |
Target: 5'- cGCCGcCGGGCGgcgcgCCAagccGGGCCACc -3' miRNA: 3'- aCGGCaGUUCGCaca--GGUa---UUUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 103793 | 0.68 | 0.96396 |
Target: 5'- gGCCGUCuucGGUGUGcgCCGUugcgcccGCCGCc -3' miRNA: 3'- aCGGCAGu--UCGCACa-GGUAuu-----UGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 100917 | 0.67 | 0.978634 |
Target: 5'- cGCCG-CGAGCGUcgCCugcAGCCGCu -3' miRNA: 3'- aCGGCaGUUCGCAcaGGuauUUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 100505 | 0.72 | 0.843122 |
Target: 5'- gUGCCGUC-GGCG--UCCAgguAGCCGCg -3' miRNA: 3'- -ACGGCAGuUCGCacAGGUau-UUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 99606 | 0.66 | 0.986739 |
Target: 5'- -aCCG-CGAGCGUcGUCCAcagcGCCGCc -3' miRNA: 3'- acGGCaGUUCGCA-CAGGUauu-UGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 98160 | 0.77 | 0.590203 |
Target: 5'- gGCCGcgggcggCGGGUGUGUCCuugGAGCCGCc -3' miRNA: 3'- aCGGCa------GUUCGCACAGGua-UUUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 97831 | 0.67 | 0.973421 |
Target: 5'- gGCCcuGUCGcgcAGCGUGUCCuc---CCGCu -3' miRNA: 3'- aCGG--CAGU---UCGCACAGGuauuuGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 97021 | 0.73 | 0.807554 |
Target: 5'- gGCCGUCGGGCGcGcCCG---GCCGCc -3' miRNA: 3'- aCGGCAGUUCGCaCaGGUauuUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 96159 | 0.76 | 0.643867 |
Target: 5'- gGCCGUCGugccgcGCGUGcCCAUGuuugcgacguacGACCACg -3' miRNA: 3'- aCGGCAGUu-----CGCACaGGUAU------------UUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 93847 | 0.67 | 0.976132 |
Target: 5'- cGCCGcCGAGCa-GUCCAcGAGgCGCg -3' miRNA: 3'- aCGGCaGUUCGcaCAGGUaUUUgGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 93100 | 0.7 | 0.903687 |
Target: 5'- gGCCGUCGAGCGUcagcaucagcgcGcCCGUGcccggcuCCACg -3' miRNA: 3'- aCGGCAGUUCGCA------------CaGGUAUuu-----GGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 92144 | 0.68 | 0.956477 |
Target: 5'- gGCCGUaCGugcuCGUGUCCG---GCCACg -3' miRNA: 3'- aCGGCA-GUuc--GCACAGGUauuUGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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