miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 5' -50.9 NC_005261.1 + 107942 0.66 0.98305
Target:  5'- cGCCGcCA--CGUaGUCCGUGcgcGGCCGCg -3'
miRNA:   3'- aCGGCaGUucGCA-CAGGUAU---UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 107891 0.67 0.970494
Target:  5'- gGCCG-CGAGCGcGgCCGccAGCCGCg -3'
miRNA:   3'- aCGGCaGUUCGCaCaGGUauUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 107002 0.68 0.956477
Target:  5'- gGCuCGgggaaGAGCGggugGUCCGcGAGCCGCg -3'
miRNA:   3'- aCG-GCag---UUCGCa---CAGGUaUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 106296 0.73 0.798199
Target:  5'- cGCCGUCGaccucGGCGagcagGUCUuccgucGUGAGCCACg -3'
miRNA:   3'- aCGGCAGU-----UCGCa----CAGG------UAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 104663 0.67 0.980937
Target:  5'- cGCUGgCGGGCGUGUgcugcggcagcgCC-UGGGCCACc -3'
miRNA:   3'- aCGGCaGUUCGCACA------------GGuAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 104391 0.69 0.948
Target:  5'- gGCCGagAGGCGcG-CCAUAAAgCGCg -3'
miRNA:   3'- aCGGCagUUCGCaCaGGUAUUUgGUG- -5'
23569 5' -50.9 NC_005261.1 + 104189 0.68 0.96396
Target:  5'- gGUCGUCGGGCGggacggcGUCCAggcGCuCGCg -3'
miRNA:   3'- aCGGCAGUUCGCa------CAGGUauuUG-GUG- -5'
23569 5' -50.9 NC_005261.1 + 104067 0.67 0.976132
Target:  5'- gGCCG-CGAGCGcGUCCAgcu-CgGCg -3'
miRNA:   3'- aCGGCaGUUCGCaCAGGUauuuGgUG- -5'
23569 5' -50.9 NC_005261.1 + 103883 0.66 0.988334
Target:  5'- cGCCGcCGGGCGgcgcgCCAagccGGGCCACc -3'
miRNA:   3'- aCGGCaGUUCGCaca--GGUa---UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 103793 0.68 0.96396
Target:  5'- gGCCGUCuucGGUGUGcgCCGUugcgcccGCCGCc -3'
miRNA:   3'- aCGGCAGu--UCGCACa-GGUAuu-----UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 100917 0.67 0.978634
Target:  5'- cGCCG-CGAGCGUcgCCugcAGCCGCu -3'
miRNA:   3'- aCGGCaGUUCGCAcaGGuauUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 100505 0.72 0.843122
Target:  5'- gUGCCGUC-GGCG--UCCAgguAGCCGCg -3'
miRNA:   3'- -ACGGCAGuUCGCacAGGUau-UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 99606 0.66 0.986739
Target:  5'- -aCCG-CGAGCGUcGUCCAcagcGCCGCc -3'
miRNA:   3'- acGGCaGUUCGCA-CAGGUauu-UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 98160 0.77 0.590203
Target:  5'- gGCCGcgggcggCGGGUGUGUCCuugGAGCCGCc -3'
miRNA:   3'- aCGGCa------GUUCGCACAGGua-UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 97831 0.67 0.973421
Target:  5'- gGCCcuGUCGcgcAGCGUGUCCuc---CCGCu -3'
miRNA:   3'- aCGG--CAGU---UCGCACAGGuauuuGGUG- -5'
23569 5' -50.9 NC_005261.1 + 97021 0.73 0.807554
Target:  5'- gGCCGUCGGGCGcGcCCG---GCCGCc -3'
miRNA:   3'- aCGGCAGUUCGCaCaGGUauuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 96159 0.76 0.643867
Target:  5'- gGCCGUCGugccgcGCGUGcCCAUGuuugcgacguacGACCACg -3'
miRNA:   3'- aCGGCAGUu-----CGCACaGGUAU------------UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 93847 0.67 0.976132
Target:  5'- cGCCGcCGAGCa-GUCCAcGAGgCGCg -3'
miRNA:   3'- aCGGCaGUUCGcaCAGGUaUUUgGUG- -5'
23569 5' -50.9 NC_005261.1 + 93100 0.7 0.903687
Target:  5'- gGCCGUCGAGCGUcagcaucagcgcGcCCGUGcccggcuCCACg -3'
miRNA:   3'- aCGGCAGUUCGCA------------CaGGUAUuu-----GGUG- -5'
23569 5' -50.9 NC_005261.1 + 92144 0.68 0.956477
Target:  5'- gGCCGUaCGugcuCGUGUCCG---GCCACg -3'
miRNA:   3'- aCGGCA-GUuc--GCACAGGUauuUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.