miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 5' -50.9 NC_005261.1 + 136267 0.69 0.948
Target:  5'- gGCCGUCGGGCaggcgcacGUGUaCCugcgcGCCGCg -3'
miRNA:   3'- aCGGCAGUUCG--------CACA-GGuauu-UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 134209 0.72 0.834526
Target:  5'- cUGCCG-CAcguggcggccuGCGUGgCCAUGAGCCGCc -3'
miRNA:   3'- -ACGGCaGUu----------CGCACaGGUAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 133161 0.69 0.938496
Target:  5'- cGCCGUC-GGCGUcgccgCCGacAACCGCg -3'
miRNA:   3'- aCGGCAGuUCGCAca---GGUauUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 132777 0.71 0.857246
Target:  5'- cGCCGUCAugcuggAGCGccccuucgccgaggCCAUGAGCCGCu -3'
miRNA:   3'- aCGGCAGU------UCGCaca-----------GGUAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 132312 0.7 0.896972
Target:  5'- uUGCCGUCGAGCGagcuagCCAgccGGCCGg -3'
miRNA:   3'- -ACGGCAGUUCGCaca---GGUau-UUGGUg -5'
23569 5' -50.9 NC_005261.1 + 132025 0.67 0.978634
Target:  5'- cGCCGUCAcGGaCGUGgccgCCcUGGACCcCg -3'
miRNA:   3'- aCGGCAGU-UC-GCACa---GGuAUUUGGuG- -5'
23569 5' -50.9 NC_005261.1 + 127039 0.67 0.970189
Target:  5'- aGUCGUCGaacgccucgauGGCGUcguacggGUCCAUGGuGCCGCc -3'
miRNA:   3'- aCGGCAGU-----------UCGCA-------CAGGUAUU-UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 123679 0.72 0.816732
Target:  5'- gGCCGUacgaaAGGCGUGgucgCCGggcGGCCGCg -3'
miRNA:   3'- aCGGCAg----UUCGCACa---GGUau-UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 123670 0.66 0.98305
Target:  5'- cGCUGUCAucucGCGcacGUCCcggcgcucagcGUGGGCCGCg -3'
miRNA:   3'- aCGGCAGUu---CGCa--CAGG-----------UAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 123402 0.69 0.927946
Target:  5'- cUGCCGUgCucccGGCGcaUCUAUAAGCCGCg -3'
miRNA:   3'- -ACGGCA-Gu---UCGCacAGGUAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 123371 0.66 0.98498
Target:  5'- aUGCUGUCcAGCGaGagguacagcUCCAUGAcccGCCGCu -3'
miRNA:   3'- -ACGGCAGuUCGCaC---------AGGUAUU---UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 122421 1.11 0.005194
Target:  5'- gUGCCGUCAAGCGUGUCCAUAAACCACa -3'
miRNA:   3'- -ACGGCAGUUCGCACAGGUAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 121520 0.66 0.98657
Target:  5'- gGCCGUCGauGGCGagcuccucgucgcUGUCg--GAGCCGCc -3'
miRNA:   3'- aCGGCAGU--UCGC-------------ACAGguaUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 119227 0.7 0.916341
Target:  5'- cUGCCGgggCGAGCGUGgCCGaucgcGGCCAUc -3'
miRNA:   3'- -ACGGCa--GUUCGCACaGGUau---UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 118250 0.7 0.910144
Target:  5'- cGCCGUCugcGGCGUGcCgGUGcACUGCg -3'
miRNA:   3'- aCGGCAGu--UCGCACaGgUAUuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 118163 0.7 0.922275
Target:  5'- gGCCGUCGcGGCGgGgcuugCCGUcuGGGCCGCg -3'
miRNA:   3'- aCGGCAGU-UCGCaCa----GGUA--UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 117517 0.73 0.807554
Target:  5'- cGCCGcCAcgaugAGCGUGUCC----ACCGCg -3'
miRNA:   3'- aCGGCaGU-----UCGCACAGGuauuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 113269 0.69 0.943378
Target:  5'- aUGCCGUUcgacggcuacgaGGGCGUgGUCCucucgcuGCCGCg -3'
miRNA:   3'- -ACGGCAG------------UUCGCA-CAGGuauu---UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 109775 0.66 0.991076
Target:  5'- cGCCGUCucGgGcGUCCc--GGCCGCu -3'
miRNA:   3'- aCGGCAGuuCgCaCAGGuauUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 109367 0.67 0.976132
Target:  5'- aGCCGcUCGAGCGcgGcCCAgagGGcCCGCa -3'
miRNA:   3'- aCGGC-AGUUCGCa-CaGGUa--UUuGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.