Results 1 - 20 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23569 | 5' | -50.9 | NC_005261.1 | + | 71133 | 0.66 | 0.986739 |
Target: 5'- cGCCGcccgCAccGCGUcgcgCCAUGGACCGCc -3' miRNA: 3'- aCGGCa---GUu-CGCAca--GGUAUUUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 2354 | 0.66 | 0.982435 |
Target: 5'- cUGCCG-CAGgccugcuuguGCGUGUCCAaGGcgucgaugaagcccGCCACg -3' miRNA: 3'- -ACGGCaGUU----------CGCACAGGUaUU--------------UGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 6525 | 0.66 | 0.98305 |
Target: 5'- cGCCGccuggcucUCgAGGCG-GUCCAgc-GCCGCg -3' miRNA: 3'- aCGGC--------AG-UUCGCaCAGGUauuUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 36772 | 0.66 | 0.98305 |
Target: 5'- cGCCGcCGgcGGCGcUGgggCCAgcgcUGGACCGCg -3' miRNA: 3'- aCGGCaGU--UCGC-ACa--GGU----AUUUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 78971 | 0.66 | 0.98305 |
Target: 5'- cGCCGUgCGAcGCGUGgcgCCGgcgcCCGCu -3' miRNA: 3'- aCGGCA-GUU-CGCACa--GGUauuuGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 4431 | 0.66 | 0.98498 |
Target: 5'- cGCCGUCGAGCa-GcCCGggcggGAugcGCCGCa -3' miRNA: 3'- aCGGCAGUUCGcaCaGGUa----UU---UGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 60591 | 0.66 | 0.98498 |
Target: 5'- gGCCGUC-GGCGaUGgcgCCGgccaGGGCCAUg -3' miRNA: 3'- aCGGCAGuUCGC-ACa--GGUa---UUUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 8841 | 0.66 | 0.986739 |
Target: 5'- gGCCGUCucacAGCccgGUGgaCCcgAAGCCGCg -3' miRNA: 3'- aCGGCAGu---UCG---CACa-GGuaUUUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 22413 | 0.66 | 0.986739 |
Target: 5'- aGCUGgcgCAccGCGUGUgCGUGAGCCuCa -3' miRNA: 3'- aCGGCa--GUu-CGCACAgGUAUUUGGuG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 4897 | 0.66 | 0.989777 |
Target: 5'- cGCCGcgCGcGCGUG-CCGgcagGAGCUGCg -3' miRNA: 3'- aCGGCa-GUuCGCACaGGUa---UUUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 54977 | 0.66 | 0.986739 |
Target: 5'- cUG-CGUCAccgcgaaccagGGCGaGUCCGUGGGCCGg -3' miRNA: 3'- -ACgGCAGU-----------UCGCaCAGGUAUUUGGUg -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 54507 | 0.66 | 0.988334 |
Target: 5'- cGCCGUCAAGCuaaacgcgCuCAUGGugCGCu -3' miRNA: 3'- aCGGCAGUUCGcaca----G-GUAUUugGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 77075 | 0.66 | 0.988334 |
Target: 5'- gGCCGUCgAGGCGgcgCCGgugcacGGCCAUg -3' miRNA: 3'- aCGGCAG-UUCGCacaGGUau----UUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 7776 | 0.66 | 0.989777 |
Target: 5'- aGCCGcUCGGGCcaGUCguaggAGACCACg -3' miRNA: 3'- aCGGC-AGUUCGcaCAGgua--UUUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 70873 | 0.66 | 0.989777 |
Target: 5'- cGCCGU--GGCGUGgCCGgcgGugCACa -3' miRNA: 3'- aCGGCAguUCGCACaGGUau-UugGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 3193 | 0.66 | 0.988334 |
Target: 5'- cGCCG-CAGGCGUcggCCucgccGCCGCg -3' miRNA: 3'- aCGGCaGUUCGCAca-GGuauu-UGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 56482 | 0.66 | 0.988334 |
Target: 5'- cGCCGUCuu-CGcGUCCGUcuuCCACu -3' miRNA: 3'- aCGGCAGuucGCaCAGGUAuuuGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 86297 | 0.66 | 0.988334 |
Target: 5'- cGCCGgcgaCGAGCGgGaCCA--GGCCGCg -3' miRNA: 3'- aCGGCa---GUUCGCaCaGGUauUUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 109775 | 0.66 | 0.991076 |
Target: 5'- cGCCGUCucGgGcGUCCc--GGCCGCu -3' miRNA: 3'- aCGGCAGuuCgCaCAGGuauUUGGUG- -5' |
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23569 | 5' | -50.9 | NC_005261.1 | + | 61137 | 0.66 | 0.988334 |
Target: 5'- gGCCGUCGAGagcaGcGUCCGc--GCCAg -3' miRNA: 3'- aCGGCAGUUCg---CaCAGGUauuUGGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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