miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 5' -50.9 NC_005261.1 + 122421 1.11 0.005194
Target:  5'- gUGCCGUCAAGCGUGUCCAUAAACCACa -3'
miRNA:   3'- -ACGGCAGUUCGCACAGGUAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 85636 0.78 0.526979
Target:  5'- cGCCGUUGAGCaG-GUCCAUGAagcGCCGCc -3'
miRNA:   3'- aCGGCAGUUCG-CaCAGGUAUU---UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 61790 0.77 0.579537
Target:  5'- cGCCGUCGGGCGcGUCC----GCCAUg -3'
miRNA:   3'- aCGGCAGUUCGCaCAGGuauuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 98160 0.77 0.590203
Target:  5'- gGCCGcgggcggCGGGUGUGUCCuugGAGCCGCc -3'
miRNA:   3'- aCGGCa------GUUCGCACAGGua-UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 28231 0.76 0.643867
Target:  5'- cGCCGgCGGGCGUGUCCAcgacGACCu- -3'
miRNA:   3'- aCGGCaGUUCGCACAGGUau--UUGGug -5'
23569 5' -50.9 NC_005261.1 + 96159 0.76 0.643867
Target:  5'- gGCCGUCGugccgcGCGUGcCCAUGuuugcgacguacGACCACg -3'
miRNA:   3'- aCGGCAGUu-----CGCACaGGUAU------------UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 64676 0.74 0.759228
Target:  5'- cGCCGUggugcggcacCGGGCGcGUCCcgGGGCCGCc -3'
miRNA:   3'- aCGGCA----------GUUCGCaCAGGuaUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 106296 0.73 0.798199
Target:  5'- cGCCGUCGaccucGGCGagcagGUCUuccgucGUGAGCCACg -3'
miRNA:   3'- aCGGCAGU-----UCGCa----CAGG------UAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 117517 0.73 0.807554
Target:  5'- cGCCGcCAcgaugAGCGUGUCC----ACCGCg -3'
miRNA:   3'- aCGGCaGU-----UCGCACAGGuauuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 97021 0.73 0.807554
Target:  5'- gGCCGUCGGGCGcGcCCG---GCCGCc -3'
miRNA:   3'- aCGGCAGUUCGCaCaGGUauuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 123679 0.72 0.816732
Target:  5'- gGCCGUacgaaAGGCGUGgucgCCGggcGGCCGCg -3'
miRNA:   3'- aCGGCAg----UUCGCACa---GGUau-UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 84967 0.72 0.851507
Target:  5'- aGgCGUCGGGCGcGUCCGcGAugCGCc -3'
miRNA:   3'- aCgGCAGUUCGCaCAGGUaUUugGUG- -5'
23569 5' -50.9 NC_005261.1 + 12673 0.72 0.816732
Target:  5'- cGUCGUCcucGAGCGgGUCCcUAAACCAg -3'
miRNA:   3'- aCGGCAG---UUCGCaCAGGuAUUUGGUg -5'
23569 5' -50.9 NC_005261.1 + 29692 0.72 0.834526
Target:  5'- cUGCCG-CAcguggcggccuGCGUGgCCAUGAGCCGCc -3'
miRNA:   3'- -ACGGCaGUu----------CGCACaGGUAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 100505 0.72 0.843122
Target:  5'- gUGCCGUC-GGCG--UCCAgguAGCCGCg -3'
miRNA:   3'- -ACGGCAGuUCGCacAGGUau-UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 134209 0.72 0.834526
Target:  5'- cUGCCG-CAcguggcggccuGCGUGgCCAUGAGCCGCc -3'
miRNA:   3'- -ACGGCaGUu----------CGCACaGGUAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 85808 0.72 0.816732
Target:  5'- gGCCGUCGAGUacggGUCCA--GGCCAg -3'
miRNA:   3'- aCGGCAGUUCGca--CAGGUauUUGGUg -5'
23569 5' -50.9 NC_005261.1 + 132777 0.71 0.857246
Target:  5'- cGCCGUCAugcuggAGCGccccuucgccgaggCCAUGAGCCGCu -3'
miRNA:   3'- aCGGCAGU------UCGCaca-----------GGUAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 57913 0.71 0.890002
Target:  5'- cGCgGUCGAGCGcGUcuaCCGUGAgcgcuucaacGCCACg -3'
miRNA:   3'- aCGgCAGUUCGCaCA---GGUAUU----------UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 5739 0.71 0.890002
Target:  5'- cGCgGUCGGGCGcGUCCcaGGACgGCg -3'
miRNA:   3'- aCGgCAGUUCGCaCAGGuaUUUGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.