miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 5' -50.9 NC_005261.1 + 83244 0.67 0.969572
Target:  5'- gGCCG-CcGGCGUGgCCGUAAagaccuuugcgaguGCCGCc -3'
miRNA:   3'- aCGGCaGuUCGCACaGGUAUU--------------UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 67843 0.69 0.943378
Target:  5'- gGCgCGUCGuGCGUGUC----GGCCACg -3'
miRNA:   3'- aCG-GCAGUuCGCACAGguauUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 88539 0.69 0.943378
Target:  5'- cGCCuacGUCAAGC----CCAUGGGCCACg -3'
miRNA:   3'- aCGG---CAGUUCGcacaGGUAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 136267 0.69 0.948
Target:  5'- gGCCGUCGGGCaggcgcacGUGUaCCugcgcGCCGCg -3'
miRNA:   3'- aCGGCAGUUCG--------CACA-GGuauu-UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 80679 0.68 0.952365
Target:  5'- aGCCGggcgcgugCGAcGUGUGcCCGUGcGCCGCg -3'
miRNA:   3'- aCGGCa-------GUU-CGCACaGGUAUuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 92144 0.68 0.956477
Target:  5'- gGCCGUaCGugcuCGUGUCCG---GCCACg -3'
miRNA:   3'- aCGGCA-GUuc--GCACAGGUauuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 107002 0.68 0.956477
Target:  5'- gGCuCGgggaaGAGCGggugGUCCGcGAGCCGCg -3'
miRNA:   3'- aCG-GCag---UUCGCa---CAGGUaUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 70009 0.68 0.96396
Target:  5'- cGCCGUCAGG-GUcgCCGUugucGGCCGCg -3'
miRNA:   3'- aCGGCAGUUCgCAcaGGUAu---UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 69411 0.68 0.967342
Target:  5'- gGCCGccacggccCAGGCGUuguggGUCCGcgggaUGAGCCGCa -3'
miRNA:   3'- aCGGCa-------GUUCGCA-----CAGGU-----AUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 11146 0.69 0.94048
Target:  5'- aGCCGUCAuugcggcggcgcggcGGCGgcaCCAUGGACC-Cg -3'
miRNA:   3'- aCGGCAGU---------------UCGCacaGGUAUUUGGuG- -5'
23569 5' -50.9 NC_005261.1 + 42846 0.69 0.933353
Target:  5'- gGCCG-CGAGCGgcgcgCCGggGGGCCGCg -3'
miRNA:   3'- aCGGCaGUUCGCaca--GGUa-UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 123402 0.69 0.927946
Target:  5'- cUGCCGUgCucccGGCGcaUCUAUAAGCCGCg -3'
miRNA:   3'- -ACGGCA-Gu---UCGCacAGGUAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 28231 0.76 0.643867
Target:  5'- cGCCGgCGGGCGUGUCCAcgacGACCu- -3'
miRNA:   3'- aCGGCaGUUCGCACAGGUau--UUGGug -5'
23569 5' -50.9 NC_005261.1 + 123679 0.72 0.816732
Target:  5'- gGCCGUacgaaAGGCGUGgucgCCGggcGGCCGCg -3'
miRNA:   3'- aCGGCAg----UUCGCACa---GGUau-UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 134209 0.72 0.834526
Target:  5'- cUGCCG-CAcguggcggccuGCGUGgCCAUGAGCCGCc -3'
miRNA:   3'- -ACGGCaGUu----------CGCACaGGUAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 5739 0.71 0.890002
Target:  5'- cGCgGUCGGGCGcGUCCcaGGACgGCg -3'
miRNA:   3'- aCGgCAGUUCGCaCAGGuaUUUGgUG- -5'
23569 5' -50.9 NC_005261.1 + 57913 0.71 0.890002
Target:  5'- cGCgGUCGAGCGcGUcuaCCGUGAgcgcuucaacGCCACg -3'
miRNA:   3'- aCGgCAGUUCGCaCA---GGUAUU----------UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 132312 0.7 0.896972
Target:  5'- uUGCCGUCGAGCGagcuagCCAgccGGCCGg -3'
miRNA:   3'- -ACGGCAGUUCGCaca---GGUau-UUGGUg -5'
23569 5' -50.9 NC_005261.1 + 93100 0.7 0.903687
Target:  5'- gGCCGUCGAGCGUcagcaucagcgcGcCCGUGcccggcuCCACg -3'
miRNA:   3'- aCGGCAGUUCGCA------------CaGGUAUuu-----GGUG- -5'
23569 5' -50.9 NC_005261.1 + 85148 0.7 0.910144
Target:  5'- gUGCCuUCcuGCG-GUCCGUGcGCCGCc -3'
miRNA:   3'- -ACGGcAGuuCGCaCAGGUAUuUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.