miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 5' -50.9 NC_005261.1 + 109775 0.66 0.991076
Target:  5'- cGCCGUCucGgGcGUCCc--GGCCGCu -3'
miRNA:   3'- aCGGCAGuuCgCaCAGGuauUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 83017 0.67 0.980937
Target:  5'- cGCCGUCGccGGCGcccCCGggaGGGCCGCu -3'
miRNA:   3'- aCGGCAGU--UCGCacaGGUa--UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 47010 0.67 0.980937
Target:  5'- cGCCG-CGAuGCGgcgGUCCAgcc-CCGCg -3'
miRNA:   3'- aCGGCaGUU-CGCa--CAGGUauuuGGUG- -5'
23569 5' -50.9 NC_005261.1 + 122421 1.11 0.005194
Target:  5'- gUGCCGUCAAGCGUGUCCAUAAACCACa -3'
miRNA:   3'- -ACGGCAGUUCGCACAGGUAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 67078 0.66 0.988334
Target:  5'- gGCuCGcUCGGGCG-GUCCAUGGcGCgACg -3'
miRNA:   3'- aCG-GC-AGUUCGCaCAGGUAUU-UGgUG- -5'
23569 5' -50.9 NC_005261.1 + 65553 0.66 0.988334
Target:  5'- aGCgCGUgcCAGGCG--UCCAUGAaguGCCGCa -3'
miRNA:   3'- aCG-GCA--GUUCGCacAGGUAUU---UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 53049 0.66 0.988334
Target:  5'- aGCCGUCGGGagggcaGUGcUCCAccccgGGGCgGCg -3'
miRNA:   3'- aCGGCAGUUCg-----CAC-AGGUa----UUUGgUG- -5'
23569 5' -50.9 NC_005261.1 + 68509 0.66 0.988334
Target:  5'- cGCUGaugCAGGCGUGccugCCGgc-GCCGCc -3'
miRNA:   3'- aCGGCa--GUUCGCACa---GGUauuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 121520 0.66 0.98657
Target:  5'- gGCCGUCGauGGCGagcuccucgucgcUGUCg--GAGCCGCc -3'
miRNA:   3'- aCGGCAGU--UCGC-------------ACAGguaUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 86867 0.67 0.980937
Target:  5'- cGCCGcCGGGCGcGgcggCCuu-GGCCGCg -3'
miRNA:   3'- aCGGCaGUUCGCaCa---GGuauUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 64530 0.66 0.98498
Target:  5'- -cUCGUCGGGgGgcagGUCCG-GGACCACg -3'
miRNA:   3'- acGGCAGUUCgCa---CAGGUaUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 49968 0.66 0.986739
Target:  5'- cGCCGUCGucauccccGGCGccgCCGUcgucccccccGAGCCGCg -3'
miRNA:   3'- aCGGCAGU--------UCGCacaGGUA----------UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 70873 0.66 0.989777
Target:  5'- cGCCGU--GGCGUGgCCGgcgGugCACa -3'
miRNA:   3'- aCGGCAguUCGCACaGGUau-UugGUG- -5'
23569 5' -50.9 NC_005261.1 + 123670 0.66 0.98305
Target:  5'- cGCUGUCAucucGCGcacGUCCcggcgcucagcGUGGGCCGCg -3'
miRNA:   3'- aCGGCAGUu---CGCa--CAGG-----------UAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 12620 0.66 0.989777
Target:  5'- cGCCGcCAccacGGUGUaGUCCGgcgcggucugGGGCCGCg -3'
miRNA:   3'- aCGGCaGU----UCGCA-CAGGUa---------UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 99606 0.66 0.986739
Target:  5'- -aCCG-CGAGCGUcGUCCAcagcGCCGCc -3'
miRNA:   3'- acGGCaGUUCGCA-CAGGUauu-UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 107942 0.66 0.98305
Target:  5'- cGCCGcCA--CGUaGUCCGUGcgcGGCCGCg -3'
miRNA:   3'- aCGGCaGUucGCA-CAGGUAU---UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 69008 0.67 0.980937
Target:  5'- cGCCGcggcuUCGuuGGCGaGUCCGUGgcgGACUACg -3'
miRNA:   3'- aCGGC-----AGU--UCGCaCAGGUAU---UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 103883 0.66 0.988334
Target:  5'- cGCCGcCGGGCGgcgcgCCAagccGGGCCACc -3'
miRNA:   3'- aCGGCaGUUCGCaca--GGUa---UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 63651 0.66 0.988334
Target:  5'- aGCCGUCc-GCGUccCCGUucACCAUg -3'
miRNA:   3'- aCGGCAGuuCGCAcaGGUAuuUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.