miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 5' -50.9 NC_005261.1 + 100917 0.67 0.978634
Target:  5'- cGCCG-CGAGCGUcgCCugcAGCCGCu -3'
miRNA:   3'- aCGGCaGUUCGCAcaGGuauUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 47010 0.67 0.980937
Target:  5'- cGCCG-CGAuGCGgcgGUCCAgcc-CCGCg -3'
miRNA:   3'- aCGGCaGUU-CGCa--CAGGUauuuGGUG- -5'
23569 5' -50.9 NC_005261.1 + 49968 0.66 0.986739
Target:  5'- cGCCGUCGucauccccGGCGccgCCGUcgucccccccGAGCCGCg -3'
miRNA:   3'- aCGGCAGU--------UCGCacaGGUA----------UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 103883 0.66 0.988334
Target:  5'- cGCCGcCGGGCGgcgcgCCAagccGGGCCACc -3'
miRNA:   3'- aCGGCaGUUCGCaca--GGUa---UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 103793 0.68 0.96396
Target:  5'- gGCCGUCuucGGUGUGcgCCGUugcgcccGCCGCc -3'
miRNA:   3'- aCGGCAGu--UCGCACa-GGUAuu-----UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 109367 0.67 0.976132
Target:  5'- aGCCGcUCGAGCGcgGcCCAgagGGcCCGCa -3'
miRNA:   3'- aCGGC-AGUUCGCa-CaGGUa--UUuGGUG- -5'
23569 5' -50.9 NC_005261.1 + 83017 0.67 0.980937
Target:  5'- cGCCGUCGccGGCGcccCCGggaGGGCCGCu -3'
miRNA:   3'- aCGGCAGU--UCGCacaGGUa--UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 12620 0.66 0.989777
Target:  5'- cGCCGcCAccacGGUGUaGUCCGgcgcggucugGGGCCGCg -3'
miRNA:   3'- aCGGCaGU----UCGCA-CAGGUa---------UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 93847 0.67 0.976132
Target:  5'- cGCCGcCGAGCa-GUCCAcGAGgCGCg -3'
miRNA:   3'- aCGGCaGUUCGcaCAGGUaUUUgGUG- -5'
23569 5' -50.9 NC_005261.1 + 70873 0.66 0.989777
Target:  5'- cGCCGU--GGCGUGgCCGgcgGugCACa -3'
miRNA:   3'- aCGGCAguUCGCACaGGUau-UugGUG- -5'
23569 5' -50.9 NC_005261.1 + 69008 0.67 0.980937
Target:  5'- cGCCGcggcuUCGuuGGCGaGUCCGUGgcgGACUACg -3'
miRNA:   3'- aCGGC-----AGU--UCGCaCAGGUAU---UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 52281 0.67 0.978634
Target:  5'- gGUgGUCAcgacGGCG-GUCCAgccGCCACc -3'
miRNA:   3'- aCGgCAGU----UCGCaCAGGUauuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 123670 0.66 0.98305
Target:  5'- cGCUGUCAucucGCGcacGUCCcggcgcucagcGUGGGCCGCg -3'
miRNA:   3'- aCGGCAGUu---CGCa--CAGG-----------UAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 121520 0.66 0.98657
Target:  5'- gGCCGUCGauGGCGagcuccucgucgcUGUCg--GAGCCGCc -3'
miRNA:   3'- aCGGCAGU--UCGC-------------ACAGguaUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 53049 0.66 0.988334
Target:  5'- aGCCGUCGGGagggcaGUGcUCCAccccgGGGCgGCg -3'
miRNA:   3'- aCGGCAGUUCg-----CAC-AGGUa----UUUGgUG- -5'
23569 5' -50.9 NC_005261.1 + 67078 0.66 0.988334
Target:  5'- gGCuCGcUCGGGCG-GUCCAUGGcGCgACg -3'
miRNA:   3'- aCG-GC-AGUUCGCaCAGGUAUU-UGgUG- -5'
23569 5' -50.9 NC_005261.1 + 2485 0.68 0.956477
Target:  5'- gGCuCGgggaaGAGCGggugGUCCGcGAGCCGCg -3'
miRNA:   3'- aCG-GCag---UUCGCa---CAGGUaUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 71678 0.68 0.96034
Target:  5'- cGCaCGUCGgcgucugcgGGCGUGaCCAUGAACUcCa -3'
miRNA:   3'- aCG-GCAGU---------UCGCACaGGUAUUUGGuG- -5'
23569 5' -50.9 NC_005261.1 + 80418 0.68 0.967342
Target:  5'- cGCCGagagCGAGCGgg-CCGUAAagcggaaguuACCGCg -3'
miRNA:   3'- aCGGCa---GUUCGCacaGGUAUU----------UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 71334 0.67 0.973421
Target:  5'- aGCCGgccgCGAGCGcGUCCucgGUGAgcGCCGa -3'
miRNA:   3'- aCGGCa---GUUCGCaCAGG---UAUU--UGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.