miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 5' -50.9 NC_005261.1 + 109775 0.66 0.991076
Target:  5'- cGCCGUCucGgGcGUCCc--GGCCGCu -3'
miRNA:   3'- aCGGCAGuuCgCaCAGGuauUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 127039 0.67 0.970189
Target:  5'- aGUCGUCGaacgccucgauGGCGUcguacggGUCCAUGGuGCCGCc -3'
miRNA:   3'- aCGGCAGU-----------UCGCA-------CAGGUAUU-UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 3374 0.67 0.970494
Target:  5'- gGCCG-CGAGCGcGgCCGccAGCCGCg -3'
miRNA:   3'- aCGGCaGUUCGCaCaGGUauUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 104663 0.67 0.980937
Target:  5'- cGCUGgCGGGCGUGUgcugcggcagcgCC-UGGGCCACc -3'
miRNA:   3'- aCGGCaGUUCGCACA------------GGuAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 123371 0.66 0.98498
Target:  5'- aUGCUGUCcAGCGaGagguacagcUCCAUGAcccGCCGCu -3'
miRNA:   3'- -ACGGCAGuUCGCaC---------AGGUAUU---UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 73360 0.68 0.956477
Target:  5'- cGCCGgcUCAGGCGgcgCCAgcagcgcGGCCACg -3'
miRNA:   3'- aCGGC--AGUUCGCacaGGUau-----UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 14043 0.68 0.967342
Target:  5'- gGCCaugCGAGCG-GUCCGcaggcAGGCCGCg -3'
miRNA:   3'- aCGGca-GUUCGCaCAGGUa----UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 68509 0.66 0.988334
Target:  5'- cGCUGaugCAGGCGUGccugCCGgc-GCCGCc -3'
miRNA:   3'- aCGGCa--GUUCGCACa---GGUauuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 62623 0.67 0.978634
Target:  5'- gGCCaUCAgcgccAGCGUGUCCGgc-GCgACg -3'
miRNA:   3'- aCGGcAGU-----UCGCACAGGUauuUGgUG- -5'
23569 5' -50.9 NC_005261.1 + 100917 0.67 0.978634
Target:  5'- cGCCG-CGAGCGUcgCCugcAGCCGCu -3'
miRNA:   3'- aCGGCaGUUCGCAcaGGuauUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 63651 0.66 0.988334
Target:  5'- aGCCGUCc-GCGUccCCGUucACCAUg -3'
miRNA:   3'- aCGGCAGuuCGCAcaGGUAuuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 65553 0.66 0.988334
Target:  5'- aGCgCGUgcCAGGCG--UCCAUGAaguGCCGCa -3'
miRNA:   3'- aCG-GCA--GUUCGCacAGGUAUU---UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 73878 0.68 0.952365
Target:  5'- gGUCGU-GGGCGUGUCCcUGAGCUuCg -3'
miRNA:   3'- aCGGCAgUUCGCACAGGuAUUUGGuG- -5'
23569 5' -50.9 NC_005261.1 + 57580 0.68 0.956477
Target:  5'- cGCCGcgUUGAGCGcGUCgAUGuGCCACc -3'
miRNA:   3'- aCGGC--AGUUCGCaCAGgUAUuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 71334 0.67 0.973421
Target:  5'- aGCCGgccgCGAGCGcGUCCucgGUGAgcGCCGa -3'
miRNA:   3'- aCGGCa---GUUCGCaCAGG---UAUU--UGGUg -5'
23569 5' -50.9 NC_005261.1 + 107942 0.66 0.98305
Target:  5'- cGCCGcCA--CGUaGUCCGUGcgcGGCCGCg -3'
miRNA:   3'- aCGGCaGUucGCA-CAGGUAU---UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 64530 0.66 0.98498
Target:  5'- -cUCGUCGGGgGgcagGUCCG-GGACCACg -3'
miRNA:   3'- acGGCAGUUCgCa---CAGGUaUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 67078 0.66 0.988334
Target:  5'- gGCuCGcUCGGGCG-GUCCAUGGcGCgACg -3'
miRNA:   3'- aCG-GC-AGUUCGCaCAGGUAUU-UGgUG- -5'
23569 5' -50.9 NC_005261.1 + 132025 0.67 0.978634
Target:  5'- cGCCGUCAcGGaCGUGgccgCCcUGGACCcCg -3'
miRNA:   3'- aCGGCAGU-UC-GCACa---GGuAUUUGGuG- -5'
23569 5' -50.9 NC_005261.1 + 104067 0.67 0.976132
Target:  5'- gGCCG-CGAGCGcGUCCAgcu-CgGCg -3'
miRNA:   3'- aCGGCaGUUCGCaCAGGUauuuGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.