miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 5' -50.9 NC_005261.1 + 2354 0.66 0.982435
Target:  5'- cUGCCG-CAGgccugcuuguGCGUGUCCAaGGcgucgaugaagcccGCCACg -3'
miRNA:   3'- -ACGGCaGUU----------CGCACAGGUaUU--------------UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 2485 0.68 0.956477
Target:  5'- gGCuCGgggaaGAGCGggugGUCCGcGAGCCGCg -3'
miRNA:   3'- aCG-GCag---UUCGCa---CAGGUaUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 3193 0.66 0.988334
Target:  5'- cGCCG-CAGGCGUcggCCucgccGCCGCg -3'
miRNA:   3'- aCGGCaGUUCGCAca-GGuauu-UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 3374 0.67 0.970494
Target:  5'- gGCCG-CGAGCGcGgCCGccAGCCGCg -3'
miRNA:   3'- aCGGCaGUUCGCaCaGGUauUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 4431 0.66 0.98498
Target:  5'- cGCCGUCGAGCa-GcCCGggcggGAugcGCCGCa -3'
miRNA:   3'- aCGGCAGUUCGcaCaGGUa----UU---UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 4897 0.66 0.989777
Target:  5'- cGCCGcgCGcGCGUG-CCGgcagGAGCUGCg -3'
miRNA:   3'- aCGGCa-GUuCGCACaGGUa---UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 5739 0.71 0.890002
Target:  5'- cGCgGUCGGGCGcGUCCcaGGACgGCg -3'
miRNA:   3'- aCGgCAGUUCGCaCAGGuaUUUGgUG- -5'
23569 5' -50.9 NC_005261.1 + 6525 0.66 0.98305
Target:  5'- cGCCGccuggcucUCgAGGCG-GUCCAgc-GCCGCg -3'
miRNA:   3'- aCGGC--------AG-UUCGCaCAGGUauuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 7776 0.66 0.989777
Target:  5'- aGCCGcUCGGGCcaGUCguaggAGACCACg -3'
miRNA:   3'- aCGGC-AGUUCGcaCAGgua--UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 8841 0.66 0.986739
Target:  5'- gGCCGUCucacAGCccgGUGgaCCcgAAGCCGCg -3'
miRNA:   3'- aCGGCAGu---UCG---CACa-GGuaUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 11146 0.69 0.94048
Target:  5'- aGCCGUCAuugcggcggcgcggcGGCGgcaCCAUGGACC-Cg -3'
miRNA:   3'- aCGGCAGU---------------UCGCacaGGUAUUUGGuG- -5'
23569 5' -50.9 NC_005261.1 + 12620 0.66 0.989777
Target:  5'- cGCCGcCAccacGGUGUaGUCCGgcgcggucugGGGCCGCg -3'
miRNA:   3'- aCGGCaGU----UCGCA-CAGGUa---------UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 12673 0.72 0.816732
Target:  5'- cGUCGUCcucGAGCGgGUCCcUAAACCAg -3'
miRNA:   3'- aCGGCAG---UUCGCaCAGGuAUUUGGUg -5'
23569 5' -50.9 NC_005261.1 + 14043 0.68 0.967342
Target:  5'- gGCCaugCGAGCG-GUCCGcaggcAGGCCGCg -3'
miRNA:   3'- aCGGca-GUUCGCaCAGGUa----UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 16076 0.67 0.976132
Target:  5'- cGCgGUCGAGC-UGgcgucggCCGUGcACCACc -3'
miRNA:   3'- aCGgCAGUUCGcACa------GGUAUuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 18599 0.69 0.948
Target:  5'- aGCCGUgCGAG-GUGUCCGUcgcgcgcgccgAAAuCCGCg -3'
miRNA:   3'- aCGGCA-GUUCgCACAGGUA-----------UUU-GGUG- -5'
23569 5' -50.9 NC_005261.1 + 20246 0.67 0.970494
Target:  5'- cGCCGUCAGGCcgGUGUgcgcgcCCAUGgcagcGAgCGCg -3'
miRNA:   3'- aCGGCAGUUCG--CACA------GGUAU-----UUgGUG- -5'
23569 5' -50.9 NC_005261.1 + 22413 0.66 0.986739
Target:  5'- aGCUGgcgCAccGCGUGUgCGUGAGCCuCa -3'
miRNA:   3'- aCGGCa--GUu-CGCACAgGUAUUUGGuG- -5'
23569 5' -50.9 NC_005261.1 + 26682 0.67 0.980937
Target:  5'- gGCCGggCAGGCG-GUCCGcaUGAA-CGCg -3'
miRNA:   3'- aCGGCa-GUUCGCaCAGGU--AUUUgGUG- -5'
23569 5' -50.9 NC_005261.1 + 27669 0.67 0.976391
Target:  5'- gGCCGUgGAGCGcgggugugcggccugGUCCGUGcGCgCGCc -3'
miRNA:   3'- aCGGCAgUUCGCa--------------CAGGUAUuUG-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.