miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 5' -50.9 NC_005261.1 + 62623 0.67 0.978634
Target:  5'- gGCCaUCAgcgccAGCGUGUCCGgc-GCgACg -3'
miRNA:   3'- aCGGcAGU-----UCGCACAGGUauuUGgUG- -5'
23569 5' -50.9 NC_005261.1 + 63651 0.66 0.988334
Target:  5'- aGCCGUCc-GCGUccCCGUucACCAUg -3'
miRNA:   3'- aCGGCAGuuCGCAcaGGUAuuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 63687 0.69 0.941941
Target:  5'- cGCgCGUCAuauacagguucugcGGCGUguugcccagGUCCGUGAGCgGCg -3'
miRNA:   3'- aCG-GCAGU--------------UCGCA---------CAGGUAUUUGgUG- -5'
23569 5' -50.9 NC_005261.1 + 64054 0.67 0.976132
Target:  5'- aGCCGgCAGGCGcGUCaccuUGAGCaCGCg -3'
miRNA:   3'- aCGGCaGUUCGCaCAGgu--AUUUG-GUG- -5'
23569 5' -50.9 NC_005261.1 + 64530 0.66 0.98498
Target:  5'- -cUCGUCGGGgGgcagGUCCG-GGACCACg -3'
miRNA:   3'- acGGCAGUUCgCa---CAGGUaUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 64676 0.74 0.759228
Target:  5'- cGCCGUggugcggcacCGGGCGcGUCCcgGGGCCGCc -3'
miRNA:   3'- aCGGCA----------GUUCGCaCAGGuaUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 65553 0.66 0.988334
Target:  5'- aGCgCGUgcCAGGCG--UCCAUGAaguGCCGCa -3'
miRNA:   3'- aCG-GCA--GUUCGCacAGGUAUU---UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 67078 0.66 0.988334
Target:  5'- gGCuCGcUCGGGCG-GUCCAUGGcGCgACg -3'
miRNA:   3'- aCG-GC-AGUUCGCaCAGGUAUU-UGgUG- -5'
23569 5' -50.9 NC_005261.1 + 67843 0.69 0.943378
Target:  5'- gGCgCGUCGuGCGUGUC----GGCCACg -3'
miRNA:   3'- aCG-GCAGUuCGCACAGguauUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 68240 0.68 0.952365
Target:  5'- cGgCGg-GGGCGUGUUCGUGGACUGCc -3'
miRNA:   3'- aCgGCagUUCGCACAGGUAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 68509 0.66 0.988334
Target:  5'- cGCUGaugCAGGCGUGccugCCGgc-GCCGCc -3'
miRNA:   3'- aCGGCa--GUUCGCACa---GGUauuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 69008 0.67 0.980937
Target:  5'- cGCCGcggcuUCGuuGGCGaGUCCGUGgcgGACUACg -3'
miRNA:   3'- aCGGC-----AGU--UCGCaCAGGUAU---UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 69411 0.68 0.967342
Target:  5'- gGCCGccacggccCAGGCGUuguggGUCCGcgggaUGAGCCGCa -3'
miRNA:   3'- aCGGCa-------GUUCGCA-----CAGGU-----AUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 70009 0.68 0.96396
Target:  5'- cGCCGUCAGG-GUcgCCGUugucGGCCGCg -3'
miRNA:   3'- aCGGCAGUUCgCAcaGGUAu---UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 70873 0.66 0.989777
Target:  5'- cGCCGU--GGCGUGgCCGgcgGugCACa -3'
miRNA:   3'- aCGGCAguUCGCACaGGUau-UugGUG- -5'
23569 5' -50.9 NC_005261.1 + 71133 0.66 0.986739
Target:  5'- cGCCGcccgCAccGCGUcgcgCCAUGGACCGCc -3'
miRNA:   3'- aCGGCa---GUu-CGCAca--GGUAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 71334 0.67 0.973421
Target:  5'- aGCCGgccgCGAGCGcGUCCucgGUGAgcGCCGa -3'
miRNA:   3'- aCGGCa---GUUCGCaCAGG---UAUU--UGGUg -5'
23569 5' -50.9 NC_005261.1 + 71678 0.68 0.96034
Target:  5'- cGCaCGUCGgcgucugcgGGCGUGaCCAUGAACUcCa -3'
miRNA:   3'- aCG-GCAGU---------UCGCACaGGUAUUUGGuG- -5'
23569 5' -50.9 NC_005261.1 + 73360 0.68 0.956477
Target:  5'- cGCCGgcUCAGGCGgcgCCAgcagcgcGGCCACg -3'
miRNA:   3'- aCGGC--AGUUCGCacaGGUau-----UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 73878 0.68 0.952365
Target:  5'- gGUCGU-GGGCGUGUCCcUGAGCUuCg -3'
miRNA:   3'- aCGGCAgUUCGCACAGGuAUUUGGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.