miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 5' -50.9 NC_005261.1 + 99606 0.66 0.986739
Target:  5'- -aCCG-CGAGCGUcGUCCAcagcGCCGCc -3'
miRNA:   3'- acGGCaGUUCGCA-CAGGUauu-UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 54977 0.66 0.986739
Target:  5'- cUG-CGUCAccgcgaaccagGGCGaGUCCGUGGGCCGg -3'
miRNA:   3'- -ACgGCAGU-----------UCGCaCAGGUAUUUGGUg -5'
23569 5' -50.9 NC_005261.1 + 71133 0.66 0.986739
Target:  5'- cGCCGcccgCAccGCGUcgcgCCAUGGACCGCc -3'
miRNA:   3'- aCGGCa---GUu-CGCAca--GGUAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 121520 0.66 0.98657
Target:  5'- gGCCGUCGauGGCGagcuccucgucgcUGUCg--GAGCCGCc -3'
miRNA:   3'- aCGGCAGU--UCGC-------------ACAGguaUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 64530 0.66 0.98498
Target:  5'- -cUCGUCGGGgGgcagGUCCG-GGACCACg -3'
miRNA:   3'- acGGCAGUUCgCa---CAGGUaUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 123371 0.66 0.98498
Target:  5'- aUGCUGUCcAGCGaGagguacagcUCCAUGAcccGCCGCu -3'
miRNA:   3'- -ACGGCAGuUCGCaC---------AGGUAUU---UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 4431 0.66 0.98498
Target:  5'- cGCCGUCGAGCa-GcCCGggcggGAugcGCCGCa -3'
miRNA:   3'- aCGGCAGUUCGcaCaGGUa----UU---UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 60591 0.66 0.98498
Target:  5'- gGCCGUC-GGCGaUGgcgCCGgccaGGGCCAUg -3'
miRNA:   3'- aCGGCAGuUCGC-ACa--GGUa---UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 107942 0.66 0.98305
Target:  5'- cGCCGcCA--CGUaGUCCGUGcgcGGCCGCg -3'
miRNA:   3'- aCGGCaGUucGCA-CAGGUAU---UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 78971 0.66 0.98305
Target:  5'- cGCCGUgCGAcGCGUGgcgCCGgcgcCCGCu -3'
miRNA:   3'- aCGGCA-GUU-CGCACa--GGUauuuGGUG- -5'
23569 5' -50.9 NC_005261.1 + 123670 0.66 0.98305
Target:  5'- cGCUGUCAucucGCGcacGUCCcggcgcucagcGUGGGCCGCg -3'
miRNA:   3'- aCGGCAGUu---CGCa--CAGG-----------UAUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 36772 0.66 0.98305
Target:  5'- cGCCGcCGgcGGCGcUGgggCCAgcgcUGGACCGCg -3'
miRNA:   3'- aCGGCaGU--UCGC-ACa--GGU----AUUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 6525 0.66 0.98305
Target:  5'- cGCCGccuggcucUCgAGGCG-GUCCAgc-GCCGCg -3'
miRNA:   3'- aCGGC--------AG-UUCGCaCAGGUauuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 2354 0.66 0.982435
Target:  5'- cUGCCG-CAGgccugcuuguGCGUGUCCAaGGcgucgaugaagcccGCCACg -3'
miRNA:   3'- -ACGGCaGUU----------CGCACAGGUaUU--------------UGGUG- -5'
23569 5' -50.9 NC_005261.1 + 82533 0.67 0.980937
Target:  5'- gGCCGccCAAGCGg--CCGU-GGCCGCc -3'
miRNA:   3'- aCGGCa-GUUCGCacaGGUAuUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 26682 0.67 0.980937
Target:  5'- gGCCGggCAGGCG-GUCCGcaUGAA-CGCg -3'
miRNA:   3'- aCGGCa-GUUCGCaCAGGU--AUUUgGUG- -5'
23569 5' -50.9 NC_005261.1 + 47010 0.67 0.980937
Target:  5'- cGCCG-CGAuGCGgcgGUCCAgcc-CCGCg -3'
miRNA:   3'- aCGGCaGUU-CGCa--CAGGUauuuGGUG- -5'
23569 5' -50.9 NC_005261.1 + 69008 0.67 0.980937
Target:  5'- cGCCGcggcuUCGuuGGCGaGUCCGUGgcgGACUACg -3'
miRNA:   3'- aCGGC-----AGU--UCGCaCAGGUAU---UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 83017 0.67 0.980937
Target:  5'- cGCCGUCGccGGCGcccCCGggaGGGCCGCu -3'
miRNA:   3'- aCGGCAGU--UCGCacaGGUa--UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 86867 0.67 0.980937
Target:  5'- cGCCGcCGGGCGcGgcggCCuu-GGCCGCg -3'
miRNA:   3'- aCGGCaGUUCGCaCa---GGuauUUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.