miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23569 5' -50.9 NC_005261.1 + 83017 0.67 0.980937
Target:  5'- cGCCGUCGccGGCGcccCCGggaGGGCCGCu -3'
miRNA:   3'- aCGGCAGU--UCGCacaGGUa--UUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 52281 0.67 0.978634
Target:  5'- gGUgGUCAcgacGGCG-GUCCAgccGCCACc -3'
miRNA:   3'- aCGgCAGU----UCGCaCAGGUauuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 132025 0.67 0.978634
Target:  5'- cGCCGUCAcGGaCGUGgccgCCcUGGACCcCg -3'
miRNA:   3'- aCGGCAGU-UC-GCACa---GGuAUUUGGuG- -5'
23569 5' -50.9 NC_005261.1 + 100917 0.67 0.978634
Target:  5'- cGCCG-CGAGCGUcgCCugcAGCCGCu -3'
miRNA:   3'- aCGGCaGUUCGCAcaGGuauUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 90710 0.67 0.978634
Target:  5'- cGCCGUCGAGU---UCgAgcuGACCACg -3'
miRNA:   3'- aCGGCAGUUCGcacAGgUau-UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 62623 0.67 0.978634
Target:  5'- gGCCaUCAgcgccAGCGUGUCCGgc-GCgACg -3'
miRNA:   3'- aCGGcAGU-----UCGCACAGGUauuUGgUG- -5'
23569 5' -50.9 NC_005261.1 + 91525 0.67 0.978393
Target:  5'- gGCCGUCGucgcgcuAGCGaaUG-CCGUGgcGGCCGCc -3'
miRNA:   3'- aCGGCAGU-------UCGC--ACaGGUAU--UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 27669 0.67 0.976391
Target:  5'- gGCCGUgGAGCGcgggugugcggccugGUCCGUGcGCgCGCc -3'
miRNA:   3'- aCGGCAgUUCGCa--------------CAGGUAUuUG-GUG- -5'
23569 5' -50.9 NC_005261.1 + 104067 0.67 0.976132
Target:  5'- gGCCG-CGAGCGcGUCCAgcu-CgGCg -3'
miRNA:   3'- aCGGCaGUUCGCaCAGGUauuuGgUG- -5'
23569 5' -50.9 NC_005261.1 + 93847 0.67 0.976132
Target:  5'- cGCCGcCGAGCa-GUCCAcGAGgCGCg -3'
miRNA:   3'- aCGGCaGUUCGcaCAGGUaUUUgGUG- -5'
23569 5' -50.9 NC_005261.1 + 109367 0.67 0.976132
Target:  5'- aGCCGcUCGAGCGcgGcCCAgagGGcCCGCa -3'
miRNA:   3'- aCGGC-AGUUCGCa-CaGGUa--UUuGGUG- -5'
23569 5' -50.9 NC_005261.1 + 16076 0.67 0.976132
Target:  5'- cGCgGUCGAGC-UGgcgucggCCGUGcACCACc -3'
miRNA:   3'- aCGgCAGUUCGcACa------GGUAUuUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 64054 0.67 0.976132
Target:  5'- aGCCGgCAGGCGcGUCaccuUGAGCaCGCg -3'
miRNA:   3'- aCGGCaGUUCGCaCAGgu--AUUUG-GUG- -5'
23569 5' -50.9 NC_005261.1 + 87253 0.67 0.973421
Target:  5'- cGCCGUCGGccgagagguuucGCGcG-CCGUAgucGACCACg -3'
miRNA:   3'- aCGGCAGUU------------CGCaCaGGUAU---UUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 97831 0.67 0.973421
Target:  5'- gGCCcuGUCGcgcAGCGUGUCCuc---CCGCu -3'
miRNA:   3'- aCGG--CAGU---UCGCACAGGuauuuGGUG- -5'
23569 5' -50.9 NC_005261.1 + 71334 0.67 0.973421
Target:  5'- aGCCGgccgCGAGCGcGUCCucgGUGAgcGCCGa -3'
miRNA:   3'- aCGGCa---GUUCGCaCAGG---UAUU--UGGUg -5'
23569 5' -50.9 NC_005261.1 + 48640 0.67 0.970494
Target:  5'- aGCCGUCGAGuCGcGcgUCGUAGACgGCc -3'
miRNA:   3'- aCGGCAGUUC-GCaCa-GGUAUUUGgUG- -5'
23569 5' -50.9 NC_005261.1 + 20246 0.67 0.970494
Target:  5'- cGCCGUCAGGCcgGUGUgcgcgcCCAUGgcagcGAgCGCg -3'
miRNA:   3'- aCGGCAGUUCG--CACA------GGUAU-----UUgGUG- -5'
23569 5' -50.9 NC_005261.1 + 107891 0.67 0.970494
Target:  5'- gGCCG-CGAGCGcGgCCGccAGCCGCg -3'
miRNA:   3'- aCGGCaGUUCGCaCaGGUauUUGGUG- -5'
23569 5' -50.9 NC_005261.1 + 3374 0.67 0.970494
Target:  5'- gGCCG-CGAGCGcGgCCGccAGCCGCg -3'
miRNA:   3'- aCGGCaGUUCGCaCaGGUauUUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.