miRNA display CGI


Results 41 - 60 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 3' -49.8 NC_005261.1 + 331 0.68 0.979807
Target:  5'- -gGGCCCGCGAGcaCCAg---GGGCGg -3'
miRNA:   3'- caUCGGGUGCUUucGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 19016 0.68 0.979807
Target:  5'- --cGCCC-CGGcaGGGCCAUGgcGGGCGc -3'
miRNA:   3'- cauCGGGuGCU--UUCGGUAUaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 138014 0.68 0.979807
Target:  5'- -gGGCCCGCGAGcaCCAg---GGGCGg -3'
miRNA:   3'- caUCGGGUGCUUucGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 36959 0.68 0.979807
Target:  5'- -gGGCCCAUG-GAGCCcuuUGcgGAGCGc -3'
miRNA:   3'- caUCGGGUGCuUUCGGu--AUaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 21315 0.68 0.979807
Target:  5'- -cAGCCCGCGgcGGCUGUcgacGUUG-GCGa -3'
miRNA:   3'- caUCGGGUGCuuUCGGUA----UAACuCGU- -5'
23570 3' -49.8 NC_005261.1 + 27759 0.68 0.979095
Target:  5'- cGUGGUCCACGAGAGCagcccgcccaGGCAc -3'
miRNA:   3'- -CAUCGGGUGCUUUCGguauaac---UCGU- -5'
23570 3' -49.8 NC_005261.1 + 73823 0.68 0.977362
Target:  5'- --cGCCCGCGccuAGCCcgGcucUUGGGCGa -3'
miRNA:   3'- cauCGGGUGCuu-UCGGuaU---AACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 76056 0.68 0.977362
Target:  5'- cGUGGCCgGCGGgcGCCAcca-GGGCGg -3'
miRNA:   3'- -CAUCGGgUGCUuuCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 79309 0.68 0.977362
Target:  5'- -gAGCCCGCGcaugauGGCCAUGUUGccGUc -3'
miRNA:   3'- caUCGGGUGCuu----UCGGUAUAACu-CGu -5'
23570 3' -49.8 NC_005261.1 + 128329 0.68 0.977362
Target:  5'- -gGGCCUGCGggGGCUccga-GAGCGg -3'
miRNA:   3'- caUCGGGUGCuuUCGGuauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 116545 0.68 0.977106
Target:  5'- --cGCCCGCGAcgcgcucGAGCCccagccgGAGCAc -3'
miRNA:   3'- cauCGGGUGCU-------UUCGGuauaa--CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 12027 0.68 0.977106
Target:  5'- --cGCCCGCGAcgcgcucGAGCCccagccgGAGCAc -3'
miRNA:   3'- cauCGGGUGCU-------UUCGGuauaa--CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 16795 0.68 0.976847
Target:  5'- -aAGCCCGCcaGGAAGCCGUcccagaacggGGGCGu -3'
miRNA:   3'- caUCGGGUG--CUUUCGGUAuaa-------CUCGU- -5'
23570 3' -49.8 NC_005261.1 + 47577 0.68 0.974705
Target:  5'- gGUGG-CCGCGAcGGCCAggcaGGGCAg -3'
miRNA:   3'- -CAUCgGGUGCUuUCGGUauaaCUCGU- -5'
23570 3' -49.8 NC_005261.1 + 22698 0.68 0.974705
Target:  5'- -gGGCCCgGCGAcgAGGCCGUcgagGAGCc -3'
miRNA:   3'- caUCGGG-UGCU--UUCGGUAuaa-CUCGu -5'
23570 3' -49.8 NC_005261.1 + 36568 0.68 0.974705
Target:  5'- -cGGCCUACGAGGcGCagAUGcUGAGCAc -3'
miRNA:   3'- caUCGGGUGCUUU-CGg-UAUaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 60147 0.68 0.974705
Target:  5'- -gGGCCggCGCGggGGCCAgcgccUGGGCc -3'
miRNA:   3'- caUCGG--GUGCuuUCGGUaua--ACUCGu -5'
23570 3' -49.8 NC_005261.1 + 127987 0.68 0.974705
Target:  5'- -aGGCCCGCGGcggcgagugcgcGGGCCcgccUGGGCAg -3'
miRNA:   3'- caUCGGGUGCU------------UUCGGuauaACUCGU- -5'
23570 3' -49.8 NC_005261.1 + 127215 0.68 0.974705
Target:  5'- -gGGCCCgGCGAcgAGGCCGUcgagGAGCc -3'
miRNA:   3'- caUCGGG-UGCU--UUCGGUAuaa-CUCGu -5'
23570 3' -49.8 NC_005261.1 + 51233 0.68 0.974705
Target:  5'- uUGGCCUucgACGAGGGCCAcga-GGGCGc -3'
miRNA:   3'- cAUCGGG---UGCUUUCGGUauaaCUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.