miRNA display CGI


Results 41 - 60 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 5' -60.5 NC_005261.1 + 8092 0.72 0.374865
Target:  5'- cGUGGUGCGCucGGCggaCGGCGCgcggCGGCUCGc -3'
miRNA:   3'- cCACCACGUG--CCG---GCUGCG----GUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 121061 0.72 0.374865
Target:  5'- uGUGGcGCGCGGUgugcgCGGCGCCGGCg-- -3'
miRNA:   3'- cCACCaCGUGCCG-----GCUGCGGUCGagc -5'
23570 5' -60.5 NC_005261.1 + 125703 0.72 0.382847
Target:  5'- -uUGGcccgGCgACGGCCGcCGCgGGCUCGg -3'
miRNA:   3'- ccACCa---CG-UGCCGGCuGCGgUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 81933 0.72 0.382847
Target:  5'- aGGcGGgagGCcgugGCGGCgaacagCGGCGCCAGCUCGc -3'
miRNA:   3'- -CCaCCa--CG----UGCCG------GCUGCGGUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 39455 0.72 0.390942
Target:  5'- -----cGCGCGGCCGGCGgCCGGCggCGg -3'
miRNA:   3'- ccaccaCGUGCCGGCUGC-GGUCGa-GC- -5'
23570 5' -60.5 NC_005261.1 + 3860 0.71 0.399147
Target:  5'- --cGGcgccGCGCGGCCGgcgagcacgGCGCgCAGCUCGg -3'
miRNA:   3'- ccaCCa---CGUGCCGGC---------UGCG-GUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 108377 0.71 0.399147
Target:  5'- --cGGcgccGCGCGGCCGgcgagcacgGCGCgCAGCUCGg -3'
miRNA:   3'- ccaCCa---CGUGCCGGC---------UGCG-GUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 53815 0.71 0.399147
Target:  5'- cGGaGG-GCGCGGCCGACauGCUgcgcgagcuggAGCUCGa -3'
miRNA:   3'- -CCaCCaCGUGCCGGCUG--CGG-----------UCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 97084 0.71 0.407461
Target:  5'- cGGaGGcgccgGCugGGCCGgggGCGCCAGC-CGg -3'
miRNA:   3'- -CCaCCa----CGugCCGGC---UGCGGUCGaGC- -5'
23570 5' -60.5 NC_005261.1 + 130512 0.71 0.415884
Target:  5'- cGUGGcgcagGCGCuGGCCGaagcGCGCCcGCUCGu -3'
miRNA:   3'- cCACCa----CGUG-CCGGC----UGCGGuCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 80250 0.71 0.424411
Target:  5'- -uUGGcgGCGCGGCCGcgcGCGCCuGCgUCGc -3'
miRNA:   3'- ccACCa-CGUGCCGGC---UGCGGuCG-AGC- -5'
23570 5' -60.5 NC_005261.1 + 12091 0.71 0.424411
Target:  5'- cGG-GGcgGCucaaaGGCgCGGCGCCAGCUCu -3'
miRNA:   3'- -CCaCCa-CGug---CCG-GCUGCGGUCGAGc -5'
23570 5' -60.5 NC_005261.1 + 57369 0.71 0.432175
Target:  5'- -----cGCGCGGcCCGACGCCcgccagcAGCUCGg -3'
miRNA:   3'- ccaccaCGUGCC-GGCUGCGG-------UCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 101107 0.71 0.433043
Target:  5'- --cGGUGcCACGGCCGGCGCgCAGa--- -3'
miRNA:   3'- ccaCCAC-GUGCCGGCUGCG-GUCgagc -5'
23570 5' -60.5 NC_005261.1 + 15294 0.71 0.433043
Target:  5'- uGG-GGUugagcGCGCGGCCG-CGCU-GCUCGg -3'
miRNA:   3'- -CCaCCA-----CGUGCCGGCuGCGGuCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 38798 0.71 0.436524
Target:  5'- -aUGGUcuccuccaucgacgaGCuCGGgCGGCGCCAGCUCa -3'
miRNA:   3'- ccACCA---------------CGuGCCgGCUGCGGUCGAGc -5'
23570 5' -60.5 NC_005261.1 + 15422 0.71 0.441776
Target:  5'- --gGGUGC-UGGCgGGCGCgCGGCUCu -3'
miRNA:   3'- ccaCCACGuGCCGgCUGCG-GUCGAGc -5'
23570 5' -60.5 NC_005261.1 + 91077 0.71 0.441776
Target:  5'- uGGUGGU-CuCGGCCgccGACGCCGGCg-- -3'
miRNA:   3'- -CCACCAcGuGCCGG---CUGCGGUCGagc -5'
23570 5' -60.5 NC_005261.1 + 78492 0.7 0.450607
Target:  5'- uGGUGGaGgGCGGCCGcGCGCCGccGCUg- -3'
miRNA:   3'- -CCACCaCgUGCCGGC-UGCGGU--CGAgc -5'
23570 5' -60.5 NC_005261.1 + 11700 0.7 0.450607
Target:  5'- cGUGGccgagGCGCGGCgGGCGCgGGCg-- -3'
miRNA:   3'- cCACCa----CGUGCCGgCUGCGgUCGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.