miRNA display CGI


Results 41 - 60 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 5' -60.5 NC_005261.1 + 59882 0.66 0.701243
Target:  5'- --gGGUGC-CGGCgGGCaGC-AGCUCGu -3'
miRNA:   3'- ccaCCACGuGCCGgCUG-CGgUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 23237 0.66 0.701243
Target:  5'- --cGGUGCAgcgGGCCG--GCCuGCUCGg -3'
miRNA:   3'- ccaCCACGUg--CCGGCugCGGuCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 34517 0.66 0.701243
Target:  5'- uGGUGG-GCACcuucGCCGugacggccCGCgAGCUCGc -3'
miRNA:   3'- -CCACCaCGUGc---CGGCu-------GCGgUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 42935 0.66 0.701243
Target:  5'- aGUGG-GUGCGGauccacCCGACGCCgcgcacgcGGCUCu -3'
miRNA:   3'- cCACCaCGUGCC------GGCUGCGG--------UCGAGc -5'
23570 5' -60.5 NC_005261.1 + 23787 0.66 0.701243
Target:  5'- gGGUGGgcucgccgggGCAggcCGGCUGGgGCgGGCUUGc -3'
miRNA:   3'- -CCACCa---------CGU---GCCGGCUgCGgUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 50626 0.66 0.701243
Target:  5'- -uUGGUGCuccacgcggGCGGCggggUGGCGCCGGCg-- -3'
miRNA:   3'- ccACCACG---------UGCCG----GCUGCGGUCGagc -5'
23570 5' -60.5 NC_005261.1 + 23844 0.66 0.701243
Target:  5'- gGGUGGgcucgccgggGCAggcCGGCUGGgGCgGGCUUGc -3'
miRNA:   3'- -CCACCa---------CGU---GCCGGCUgCGgUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 86461 0.66 0.701243
Target:  5'- --aGGgcgacGC-CGGCCaGCGCCAGCUUc -3'
miRNA:   3'- ccaCCa----CGuGCCGGcUGCGGUCGAGc -5'
23570 5' -60.5 NC_005261.1 + 66044 0.66 0.701243
Target:  5'- -----cGCGCGGCCGcCGCCAacGuCUCGg -3'
miRNA:   3'- ccaccaCGUGCCGGCuGCGGU--C-GAGC- -5'
23570 5' -60.5 NC_005261.1 + 128361 0.66 0.701243
Target:  5'- gGGUGGgcucgccgggGCAggcCGGCUGGgGCgGGCUUGc -3'
miRNA:   3'- -CCACCa---------CGU---GCCGGCUgCGgUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 107889 0.66 0.701243
Target:  5'- --aGGgccgcgaGCGCGGCCGccagccGCGCCGGCa-- -3'
miRNA:   3'- ccaCCa------CGUGCCGGC------UGCGGUCGagc -5'
23570 5' -60.5 NC_005261.1 + 127754 0.66 0.701243
Target:  5'- --cGGUGCAgcgGGCCG--GCCuGCUCGg -3'
miRNA:   3'- ccaCCACGUg--CCGGCugCGGuCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 69554 0.66 0.701243
Target:  5'- --cGGcccccaCGCGGCgGACGCCGGCggcgCGg -3'
miRNA:   3'- ccaCCac----GUGCCGgCUGCGGUCGa---GC- -5'
23570 5' -60.5 NC_005261.1 + 60124 0.66 0.701243
Target:  5'- cGGUGGgGcCGgGGCCGGgGCCugGGC-CGg -3'
miRNA:   3'- -CCACCaC-GUgCCGGCUgCGG--UCGaGC- -5'
23570 5' -60.5 NC_005261.1 + 29307 0.66 0.701243
Target:  5'- cGUGGgcgUGCugGGCCccgaccccGCGCCccGCUCGc -3'
miRNA:   3'- cCACC---ACGugCCGGc-------UGCGGu-CGAGC- -5'
23570 5' -60.5 NC_005261.1 + 128304 0.66 0.701243
Target:  5'- gGGUGGgcucgccgggGCAggcCGGCUGGgGCgGGCUUGc -3'
miRNA:   3'- -CCACCa---------CGU---GCCGGCUgCGgUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 80079 0.66 0.698318
Target:  5'- cGUGGggGaCGCGGaCCGGCGCgcgcgccgcgguacCGGCUUGg -3'
miRNA:   3'- cCACCa-C-GUGCC-GGCUGCG--------------GUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 88892 0.66 0.695389
Target:  5'- cGGUGGUuaGCGCGGCggacguguacuuuuaCGacacGCGCCcgcAGCUCu -3'
miRNA:   3'- -CCACCA--CGUGCCG---------------GC----UGCGG---UCGAGc -5'
23570 5' -60.5 NC_005261.1 + 108426 0.66 0.691476
Target:  5'- --cGGgcgcccGCGCcGCCGGCGCCGGcCUCc -3'
miRNA:   3'- ccaCCa-----CGUGcCGGCUGCGGUC-GAGc -5'
23570 5' -60.5 NC_005261.1 + 132982 0.66 0.691476
Target:  5'- cGGcGG-GCACGaGCCG--GCCAcGCUCGa -3'
miRNA:   3'- -CCaCCaCGUGC-CGGCugCGGU-CGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.