Results 21 - 40 of 327 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23570 | 5' | -60.5 | NC_005261.1 | + | 138203 | 0.74 | 0.281637 |
Target: 5'- cGGgcgGGggGCAgGGCgGACGgCGGCUCGg -3' miRNA: 3'- -CCa--CCa-CGUgCCGgCUGCgGUCGAGC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 532 | 0.74 | 0.281637 |
Target: 5'- cGGgcgGGggGCAgGGCgGACGgCGGCUCGg -3' miRNA: 3'- -CCa--CCa-CGUgCCGgCUGCgGUCGAGC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 105049 | 0.74 | 0.281637 |
Target: 5'- cGGgcgGGggGCAgGGCgGACGgCGGCUCGg -3' miRNA: 3'- -CCa--CCa-CGUgCCGgCUGCgGUCGAGC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 98317 | 0.74 | 0.294694 |
Target: 5'- gGGUGGgugGCgACGGaCCGcgcGCGCCAGCUg- -3' miRNA: 3'- -CCACCa--CG-UGCC-GGC---UGCGGUCGAgc -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 14973 | 0.73 | 0.315157 |
Target: 5'- uGG-GGcgacUGCGCGGCCG-CGCCGGC-CGc -3' miRNA: 3'- -CCaCC----ACGUGCCGGCuGCGGUCGaGC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 20856 | 0.73 | 0.321501 |
Target: 5'- cGUGGcggcucuUGCGCcgcgGGCCGGCcaucGCCAGCUCGu -3' miRNA: 3'- cCACC-------ACGUG----CCGGCUG----CGGUCGAGC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 55538 | 0.73 | 0.329384 |
Target: 5'- cGUGGggaGCGCGGCggUGGCGCCcgacgagcGGCUCGa -3' miRNA: 3'- cCACCa--CGUGCCG--GCUGCGG--------UCGAGC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 6340 | 0.73 | 0.329384 |
Target: 5'- gGGUGcgcgccgucgcGUGCgGCGGCgGcCGCCAGCUCa -3' miRNA: 3'- -CCAC-----------CACG-UGCCGgCuGCGGUCGAGc -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 39208 | 0.73 | 0.336674 |
Target: 5'- uGUGG-GCGCGcGCCGccGCGCCGccGCUCGc -3' miRNA: 3'- cCACCaCGUGC-CGGC--UGCGGU--CGAGC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 54529 | 0.73 | 0.336674 |
Target: 5'- -aUGGUGCGCuGGCugCGGCGCCGcCUCGg -3' miRNA: 3'- ccACCACGUG-CCG--GCUGCGGUcGAGC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 32234 | 0.72 | 0.351604 |
Target: 5'- cGGUGGccuucUGCGCGGCCG-CGCU-GCUgGa -3' miRNA: 3'- -CCACC-----ACGUGCCGGCuGCGGuCGAgC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 44250 | 0.72 | 0.351604 |
Target: 5'- -----cGCGCGGCCGACGCCgcGGCgcgCGg -3' miRNA: 3'- ccaccaCGUGCCGGCUGCGG--UCGa--GC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 136751 | 0.72 | 0.351604 |
Target: 5'- cGGUGGccuucUGCGCGGCCG-CGCU-GCUgGa -3' miRNA: 3'- -CCACC-----ACGUGCCGGCuGCGGuCGAgC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 60076 | 0.72 | 0.359243 |
Target: 5'- aGGUGGcccgccgGCAgCGGCgGGCGCCGGggCGg -3' miRNA: 3'- -CCACCa------CGU-GCCGgCUGCGGUCgaGC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 33775 | 0.72 | 0.359243 |
Target: 5'- aGGUGGacgGCGCcGCCGGCGgCGGCgacgCGg -3' miRNA: 3'- -CCACCa--CGUGcCGGCUGCgGUCGa---GC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 54076 | 0.72 | 0.359243 |
Target: 5'- cGGUGGUgGCAggggcgUGGCCGAggccCGCCAGCg-- -3' miRNA: 3'- -CCACCA-CGU------GCCGGCU----GCGGUCGagc -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 82765 | 0.72 | 0.366997 |
Target: 5'- cGGUcaaaGUGCuccggggaGCGGCCGaagaGCGCCAGCUCc -3' miRNA: 3'- -CCAc---CACG--------UGCCGGC----UGCGGUCGAGc -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 30329 | 0.72 | 0.366997 |
Target: 5'- aGUGccgGCGCGGCUGGCGgCCGcGCUCGc -3' miRNA: 3'- cCACca-CGUGCCGGCUGC-GGU-CGAGC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 134846 | 0.72 | 0.366997 |
Target: 5'- aGUGccgGCGCGGCUGGCGgCCGcGCUCGc -3' miRNA: 3'- cCACca-CGUGCCGGCUGC-GGU-CGAGC- -5' |
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23570 | 5' | -60.5 | NC_005261.1 | + | 88949 | 0.72 | 0.366997 |
Target: 5'- --aGGUGUccuCGGCCaGCGCgCGGCUCGg -3' miRNA: 3'- ccaCCACGu--GCCGGcUGCG-GUCGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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