miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 5' -60.5 NC_005261.1 + 122145 1.1 0.000897
Target:  5'- uGGUGGUGCACGGCCGACGCCAGCUCGa -3'
miRNA:   3'- -CCACCACGUGCCGGCUGCGGUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 51618 0.8 0.111858
Target:  5'- aGGUGGacgacggcgGCGCGGCCGACGCCAaGgaCGg -3'
miRNA:   3'- -CCACCa--------CGUGCCGGCUGCGGU-CgaGC- -5'
23570 5' -60.5 NC_005261.1 + 97540 0.8 0.117681
Target:  5'- cGGaGGaGCcCGGCCGGCGCCGGCUCc -3'
miRNA:   3'- -CCaCCaCGuGCCGGCUGCGGUCGAGc -5'
23570 5' -60.5 NC_005261.1 + 26874 0.79 0.140354
Target:  5'- cGG-GGgcagcagacGCGCGGUCGGCGCCGGCUCu -3'
miRNA:   3'- -CCaCCa--------CGUGCCGGCUGCGGUCGAGc -5'
23570 5' -60.5 NC_005261.1 + 39793 0.77 0.19329
Target:  5'- cGGgGGgcgGCGCGGCCGccgGCGCCAGgCUCu -3'
miRNA:   3'- -CCaCCa--CGUGCCGGC---UGCGGUC-GAGc -5'
23570 5' -60.5 NC_005261.1 + 70989 0.77 0.198015
Target:  5'- cGUGGcGCGCGGgCGGCcgccagGCCAGCUCGc -3'
miRNA:   3'- cCACCaCGUGCCgGCUG------CGGUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 48445 0.76 0.20777
Target:  5'- cGGUGcGUgGCGCGGCCGgcgcggucaACGCCGGC-CGa -3'
miRNA:   3'- -CCAC-CA-CGUGCCGGC---------UGCGGUCGaGC- -5'
23570 5' -60.5 NC_005261.1 + 102328 0.76 0.217937
Target:  5'- --cGGcGCGCaGCCG-CGCCAGCUCGg -3'
miRNA:   3'- ccaCCaCGUGcCGGCuGCGGUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 57025 0.76 0.227986
Target:  5'- cGGUGGUccggcucgcgcccGCGCGGCCG-UGCCccgaguacgAGCUCGg -3'
miRNA:   3'- -CCACCA-------------CGUGCCGGCuGCGG---------UCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 135586 0.76 0.228526
Target:  5'- cGUGGc-CACGGCCGGCGCCGuGCUgGa -3'
miRNA:   3'- cCACCacGUGCCGGCUGCGGU-CGAgC- -5'
23570 5' -60.5 NC_005261.1 + 128418 0.75 0.239547
Target:  5'- gGGUGGgcucGCugGGCUGG-GCCAGCUgGg -3'
miRNA:   3'- -CCACCa---CGugCCGGCUgCGGUCGAgC- -5'
23570 5' -60.5 NC_005261.1 + 23901 0.75 0.239547
Target:  5'- gGGUGGgcucGCugGGCUGG-GCCAGCUgGg -3'
miRNA:   3'- -CCACCa---CGugCCGGCUgCGGUCGAgC- -5'
23570 5' -60.5 NC_005261.1 + 60413 0.75 0.239547
Target:  5'- cGGUGGUGCugGG---GCGgCAGCUCGg -3'
miRNA:   3'- -CCACCACGugCCggcUGCgGUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 53575 0.75 0.239547
Target:  5'- --cGG-GCGCGGgCGGCGCCAGC-CGg -3'
miRNA:   3'- ccaCCaCGUGCCgGCUGCGGUCGaGC- -5'
23570 5' -60.5 NC_005261.1 + 5820 0.75 0.245222
Target:  5'- aGG-GGUGCGCgGGCCaGGCGUCGGCggCGg -3'
miRNA:   3'- -CCaCCACGUG-CCGG-CUGCGGUCGa-GC- -5'
23570 5' -60.5 NC_005261.1 + 59472 0.75 0.251008
Target:  5'- cGGgGGgcagcgccgGCGCGGCCGccGCGCCAGCggCGg -3'
miRNA:   3'- -CCaCCa--------CGUGCCGGC--UGCGGUCGa-GC- -5'
23570 5' -60.5 NC_005261.1 + 41934 0.75 0.251008
Target:  5'- aGGUGc-GCGCGGCCGaggccgaagccGCGCCAGCgUCGu -3'
miRNA:   3'- -CCACcaCGUGCCGGC-----------UGCGGUCG-AGC- -5'
23570 5' -60.5 NC_005261.1 + 34415 0.75 0.262917
Target:  5'- gGGUGGcGCGCGGCCcGCGCCuGCc-- -3'
miRNA:   3'- -CCACCaCGUGCCGGcUGCGGuCGagc -5'
23570 5' -60.5 NC_005261.1 + 136792 0.75 0.262917
Target:  5'- aGGcGGUGCA-GGCCaGugGCgGGCUCGu -3'
miRNA:   3'- -CCaCCACGUgCCGG-CugCGgUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 74793 0.74 0.269042
Target:  5'- cGGcGG-GCGCGGCCuACGCCGGCgacggCGa -3'
miRNA:   3'- -CCaCCaCGUGCCGGcUGCGGUCGa----GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.