miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 5' -60.5 NC_005261.1 + 382 0.66 0.681663
Target:  5'- cGGUGGcgGCgGCGGCggCGGCGgCGGCagCGg -3'
miRNA:   3'- -CCACCa-CG-UGCCG--GCUGCgGUCGa-GC- -5'
23570 5' -60.5 NC_005261.1 + 532 0.74 0.281637
Target:  5'- cGGgcgGGggGCAgGGCgGACGgCGGCUCGg -3'
miRNA:   3'- -CCa--CCa-CGUgCCGgCUGCgGUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 1494 0.66 0.73018
Target:  5'- --aGGccaccGcCGCGGCCGgcagcucgucggGCGCCAGCUCc -3'
miRNA:   3'- ccaCCa----C-GUGCCGGC------------UGCGGUCGAGc -5'
23570 5' -60.5 NC_005261.1 + 1881 0.67 0.671811
Target:  5'- --aGGccaGCACGGCgCG-CGCCAGCgcgCGc -3'
miRNA:   3'- ccaCCa--CGUGCCG-GCuGCGGUCGa--GC- -5'
23570 5' -60.5 NC_005261.1 + 2488 0.66 0.710954
Target:  5'- -----cGCGCGGCUGaggcGCGCCAGCaUCa -3'
miRNA:   3'- ccaccaCGUGCCGGC----UGCGGUCG-AGc -5'
23570 5' -60.5 NC_005261.1 + 2500 0.69 0.553336
Target:  5'- gGGUGGUcCGCGaGCCG-CGCCGcgacCUCGg -3'
miRNA:   3'- -CCACCAcGUGC-CGGCuGCGGUc---GAGC- -5'
23570 5' -60.5 NC_005261.1 + 2983 0.67 0.642106
Target:  5'- aGGcUGGggcucgGCcugGCGGcCCGGCGCCggGGCUCc -3'
miRNA:   3'- -CC-ACCa-----CG---UGCC-GGCUGCGG--UCGAGc -5'
23570 5' -60.5 NC_005261.1 + 3372 0.66 0.701243
Target:  5'- --aGGgccgcgaGCGCGGCCGccagccGCGCCGGCa-- -3'
miRNA:   3'- ccaCCa------CGUGCCGGC------UGCGGUCGagc -5'
23570 5' -60.5 NC_005261.1 + 3445 0.66 0.710954
Target:  5'- aGGcgGGcGCGCgGGCCGccGCGCCGcGCgUCGa -3'
miRNA:   3'- -CCa-CCaCGUG-CCGGC--UGCGGU-CG-AGC- -5'
23570 5' -60.5 NC_005261.1 + 3575 0.67 0.652025
Target:  5'- uGGUGGUuCGCGGCuCGGgGCgggucugGGCUCGc -3'
miRNA:   3'- -CCACCAcGUGCCG-GCUgCGg------UCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 3860 0.71 0.399147
Target:  5'- --cGGcgccGCGCGGCCGgcgagcacgGCGCgCAGCUCGg -3'
miRNA:   3'- ccaCCa---CGUGCCGGC---------UGCG-GUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 3909 0.66 0.691476
Target:  5'- --cGGgcgcccGCGCcGCCGGCGCCGGcCUCc -3'
miRNA:   3'- ccaCCa-----CGUGcCGGCUGCGGUC-GAGc -5'
23570 5' -60.5 NC_005261.1 + 4125 0.68 0.582684
Target:  5'- uGUGGccccggcagcccUGCACGcGCCGcugcagcaggcGCGCCAGCUg- -3'
miRNA:   3'- cCACC------------ACGUGC-CGGC-----------UGCGGUCGAgc -5'
23570 5' -60.5 NC_005261.1 + 4128 0.67 0.632179
Target:  5'- cGGcGGcgaGCGCGcGCCGGCGCgCcgagAGCUCGc -3'
miRNA:   3'- -CCaCCa--CGUGC-CGGCUGCG-G----UCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 4183 0.69 0.524444
Target:  5'- ---cGUGUACgGGCCGugGCCGGC-Ca -3'
miRNA:   3'- ccacCACGUG-CCGGCugCGGUCGaGc -5'
23570 5' -60.5 NC_005261.1 + 4608 0.68 0.57286
Target:  5'- --cGGcgaGCGCGGCCcacaGCGCCAGCgCGa -3'
miRNA:   3'- ccaCCa--CGUGCCGGc---UGCGGUCGaGC- -5'
23570 5' -60.5 NC_005261.1 + 5233 0.67 0.671811
Target:  5'- --aGGUcGUACaGGUcgagCGugGCCGGCUCGu -3'
miRNA:   3'- ccaCCA-CGUG-CCG----GCugCGGUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 5255 0.68 0.57286
Target:  5'- gGGUcgcGGUGCGCGGCgacgaaGGCGgCCAcgucggcgcagcGCUCGg -3'
miRNA:   3'- -CCA---CCACGUGCCGg-----CUGC-GGU------------CGAGC- -5'
23570 5' -60.5 NC_005261.1 + 5820 0.75 0.245222
Target:  5'- aGG-GGUGCGCgGGCCaGGCGUCGGCggCGg -3'
miRNA:   3'- -CCaCCACGUG-CCGG-CUGCGGUCGa-GC- -5'
23570 5' -60.5 NC_005261.1 + 5896 0.69 0.514938
Target:  5'- cGGcUGGcuagcucgGC-CGGCCGGCugGCUAGCUCGc -3'
miRNA:   3'- -CC-ACCa-------CGuGCCGGCUG--CGGUCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.