miRNA display CGI


Results 21 - 40 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 5' -60.5 NC_005261.1 + 5942 0.67 0.652025
Target:  5'- aGGcUGGcuagcuagGC-CGGCUGGCugGCUAGCUCGg -3'
miRNA:   3'- -CC-ACCa-------CGuGCCGGCUG--CGGUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 6340 0.73 0.329384
Target:  5'- gGGUGcgcgccgucgcGUGCgGCGGCgGcCGCCAGCUCa -3'
miRNA:   3'- -CCAC-----------CACG-UGCCGgCuGCGGUCGAGc -5'
23570 5' -60.5 NC_005261.1 + 7192 0.67 0.632179
Target:  5'- aGGUGGcgGCGucGCCGGCGC--GCUCGg -3'
miRNA:   3'- -CCACCa-CGUgcCGGCUGCGguCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 7944 0.67 0.632179
Target:  5'- gGGUGGcUGUGCGGgCGugGCgGGggCGc -3'
miRNA:   3'- -CCACC-ACGUGCCgGCugCGgUCgaGC- -5'
23570 5' -60.5 NC_005261.1 + 8092 0.72 0.374865
Target:  5'- cGUGGUGCGCucGGCggaCGGCGCgcggCGGCUCGc -3'
miRNA:   3'- cCACCACGUG--CCG---GCUGCG----GUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 9811 0.68 0.560149
Target:  5'- -aUGGUGCGCGGCCuugaccccuugcugGACGCgaugCGGCgCGa -3'
miRNA:   3'- ccACCACGUGCCGG--------------CUGCG----GUCGaGC- -5'
23570 5' -60.5 NC_005261.1 + 11478 0.68 0.57286
Target:  5'- cGGaGGgGCGgGGCgGGggUGCCGGCUCGa -3'
miRNA:   3'- -CCaCCaCGUgCCGgCU--GCGGUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 11700 0.7 0.450607
Target:  5'- cGUGGccgagGCGCGGCgGGCGCgGGCg-- -3'
miRNA:   3'- cCACCa----CGUGCCGgCUGCGgUCGagc -5'
23570 5' -60.5 NC_005261.1 + 11927 0.69 0.514938
Target:  5'- cGGcGGcUGCgGCGGCCcGCGCCgcggcGGCUCGc -3'
miRNA:   3'- -CCaCC-ACG-UGCCGGcUGCGG-----UCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 12091 0.71 0.424411
Target:  5'- cGG-GGcgGCucaaaGGCgCGGCGCCAGCUCu -3'
miRNA:   3'- -CCaCCa-CGug---CCG-GCUGCGGUCGAGc -5'
23570 5' -60.5 NC_005261.1 + 12152 0.69 0.543647
Target:  5'- -aUGG-GCGCGcccGCCGAgGCCGGCgggCGg -3'
miRNA:   3'- ccACCaCGUGC---CGGCUgCGGUCGa--GC- -5'
23570 5' -60.5 NC_005261.1 + 12338 0.68 0.592542
Target:  5'- -uUGGccgGCGCGGCCGcCGCC-GCggCGg -3'
miRNA:   3'- ccACCa--CGUGCCGGCuGCGGuCGa-GC- -5'
23570 5' -60.5 NC_005261.1 + 13445 0.67 0.642106
Target:  5'- --gGGUGCAggcaGGCCGGCGCC---UCGg -3'
miRNA:   3'- ccaCCACGUg---CCGGCUGCGGucgAGC- -5'
23570 5' -60.5 NC_005261.1 + 13664 0.67 0.671811
Target:  5'- cGUGGUGCGCGaGCgGcGCGCCugggagauGGC-CGg -3'
miRNA:   3'- cCACCACGUGC-CGgC-UGCGG--------UCGaGC- -5'
23570 5' -60.5 NC_005261.1 + 13726 0.66 0.720603
Target:  5'- cGUGGaGCACGGUgGAC-CCGGaauuCUCGa -3'
miRNA:   3'- cCACCaCGUGCCGgCUGcGGUC----GAGC- -5'
23570 5' -60.5 NC_005261.1 + 13965 0.67 0.632179
Target:  5'- cGGccgGGcGCGCGGgCGGCGCCGcGCggCGc -3'
miRNA:   3'- -CCa--CCaCGUGCCgGCUGCGGU-CGa-GC- -5'
23570 5' -60.5 NC_005261.1 + 14532 0.66 0.701243
Target:  5'- cGGcGGUgGCGCGGCCG-C-CCGGCg-- -3'
miRNA:   3'- -CCaCCA-CGUGCCGGCuGcGGUCGagc -5'
23570 5' -60.5 NC_005261.1 + 14923 0.66 0.691476
Target:  5'- --aGGgGCACcaGGaUCGACGCCAGCUgGc -3'
miRNA:   3'- ccaCCaCGUG--CC-GGCUGCGGUCGAgC- -5'
23570 5' -60.5 NC_005261.1 + 14973 0.73 0.315157
Target:  5'- uGG-GGcgacUGCGCGGCCG-CGCCGGC-CGc -3'
miRNA:   3'- -CCaCC----ACGUGCCGGCuGCGGUCGaGC- -5'
23570 5' -60.5 NC_005261.1 + 15294 0.71 0.433043
Target:  5'- uGG-GGUugagcGCGCGGCCG-CGCU-GCUCGg -3'
miRNA:   3'- -CCaCCA-----CGUGCCGGCuGCGGuCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.