miRNA display CGI


Results 21 - 40 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 5' -60.5 NC_005261.1 + 67565 0.66 0.681663
Target:  5'- uGGaGGUGCggcccGCGGCCGcgGCGCCGaacCUCa -3'
miRNA:   3'- -CCaCCACG-----UGCCGGC--UGCGGUc--GAGc -5'
23570 5' -60.5 NC_005261.1 + 86461 0.66 0.701243
Target:  5'- --aGGgcgacGC-CGGCCaGCGCCAGCUUc -3'
miRNA:   3'- ccaCCa----CGuGCCGGcUGCGGUCGAGc -5'
23570 5' -60.5 NC_005261.1 + 103187 0.66 0.690497
Target:  5'- -----cGCGCGGCCGccguuagggcggcGCGCCAGCgacCGa -3'
miRNA:   3'- ccaccaCGUGCCGGC-------------UGCGGUCGa--GC- -5'
23570 5' -60.5 NC_005261.1 + 69554 0.66 0.701243
Target:  5'- --cGGcccccaCGCGGCgGACGCCGGCggcgCGg -3'
miRNA:   3'- ccaCCac----GUGCCGgCUGCGGUCGa---GC- -5'
23570 5' -60.5 NC_005261.1 + 64845 0.66 0.710954
Target:  5'- uGGUGcUGCACGcGCgCGugGCCGcguGCUgGc -3'
miRNA:   3'- -CCACcACGUGC-CG-GCugCGGU---CGAgC- -5'
23570 5' -60.5 NC_005261.1 + 71790 0.66 0.720603
Target:  5'- --cGGcgGCGCGcGCCG-CGCUGGuCUCGg -3'
miRNA:   3'- ccaCCa-CGUGC-CGGCuGCGGUC-GAGC- -5'
23570 5' -60.5 NC_005261.1 + 29307 0.66 0.701243
Target:  5'- cGUGGgcgUGCugGGCCccgaccccGCGCCccGCUCGc -3'
miRNA:   3'- cCACC---ACGugCCGGc-------UGCGGu-CGAGC- -5'
23570 5' -60.5 NC_005261.1 + 66044 0.66 0.701243
Target:  5'- -----cGCGCGGCCGcCGCCAacGuCUCGg -3'
miRNA:   3'- ccaccaCGUGCCGGCuGCGGU--C-GAGC- -5'
23570 5' -60.5 NC_005261.1 + 87386 0.66 0.691476
Target:  5'- -cUGG-GCGa-GCCacaGGCGCCAGCUCGc -3'
miRNA:   3'- ccACCaCGUgcCGG---CUGCGGUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 128361 0.66 0.701243
Target:  5'- gGGUGGgcucgccgggGCAggcCGGCUGGgGCgGGCUUGc -3'
miRNA:   3'- -CCACCa---------CGU---GCCGGCUgCGgUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 82304 0.66 0.710954
Target:  5'- --cGGcUGCGC-GCCGGCGgCGGCUgCGg -3'
miRNA:   3'- ccaCC-ACGUGcCGGCUGCgGUCGA-GC- -5'
23570 5' -60.5 NC_005261.1 + 54285 0.66 0.709986
Target:  5'- gGGUGGgGCggggacagcgaugGCGGCCG-CGC--GCUCGg -3'
miRNA:   3'- -CCACCaCG-------------UGCCGGCuGCGguCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 93082 0.66 0.710954
Target:  5'- --aGGUcacuuccucgGCGCGGCCGucgaGCGUCAGCaUCa -3'
miRNA:   3'- ccaCCA----------CGUGCCGGC----UGCGGUCG-AGc -5'
23570 5' -60.5 NC_005261.1 + 55118 0.66 0.710954
Target:  5'- -----cGCGCGGCUGGCGgCGGCggCGg -3'
miRNA:   3'- ccaccaCGUGCCGGCUGCgGUCGa-GC- -5'
23570 5' -60.5 NC_005261.1 + 77885 0.66 0.691476
Target:  5'- -cUGGcGCGCGGCCGcgGCGCC-GCa-- -3'
miRNA:   3'- ccACCaCGUGCCGGC--UGCGGuCGagc -5'
23570 5' -60.5 NC_005261.1 + 13726 0.66 0.720603
Target:  5'- cGUGGaGCACGGUgGAC-CCGGaauuCUCGa -3'
miRNA:   3'- cCACCaCGUGCCGgCUGcGGUC----GAGC- -5'
23570 5' -60.5 NC_005261.1 + 52225 0.66 0.690497
Target:  5'- --cGGcUGCugGcGCaCGACGCCccgucggcggcgcAGCUCGa -3'
miRNA:   3'- ccaCC-ACGugC-CG-GCUGCGG-------------UCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 79327 0.66 0.710954
Target:  5'- -cUGGUGCGCGcGCUGGCGCgCGcCUgCGa -3'
miRNA:   3'- ccACCACGUGC-CGGCUGCG-GUcGA-GC- -5'
23570 5' -60.5 NC_005261.1 + 97158 0.66 0.720603
Target:  5'- cGG-GGgcugGCgGCGGaCCGcgcCGCCGGCUCu -3'
miRNA:   3'- -CCaCCa---CG-UGCC-GGCu--GCGGUCGAGc -5'
23570 5' -60.5 NC_005261.1 + 132982 0.66 0.691476
Target:  5'- cGGcGG-GCACGaGCCG--GCCAcGCUCGa -3'
miRNA:   3'- -CCaCCaCGUGC-CGGCugCGGU-CGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.