miRNA display CGI


Results 1 - 20 of 327 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23570 5' -60.5 NC_005261.1 + 138203 0.74 0.281637
Target:  5'- cGGgcgGGggGCAgGGCgGACGgCGGCUCGg -3'
miRNA:   3'- -CCa--CCa-CGUgCCGgCUGCgGUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 138053 0.66 0.681663
Target:  5'- cGGUGGcgGCgGCGGCggCGGCGgCGGCagCGg -3'
miRNA:   3'- -CCACCa-CG-UGCCG--GCUGCgGUCGa-GC- -5'
23570 5' -60.5 NC_005261.1 + 136922 0.67 0.642106
Target:  5'- --cGGaGCGCGuGCCGcCGCCGGCgaCGg -3'
miRNA:   3'- ccaCCaCGUGC-CGGCuGCGGUCGa-GC- -5'
23570 5' -60.5 NC_005261.1 + 136792 0.75 0.262917
Target:  5'- aGGcGGUGCA-GGCCaGugGCgGGCUCGu -3'
miRNA:   3'- -CCaCCACGUgCCGG-CugCGgUCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 136751 0.72 0.351604
Target:  5'- cGGUGGccuucUGCGCGGCCG-CGCU-GCUgGa -3'
miRNA:   3'- -CCACC-----ACGUGCCGGCuGCGGuCGAgC- -5'
23570 5' -60.5 NC_005261.1 + 136005 0.69 0.543647
Target:  5'- --cGGUGCGCGGCgGGCucucgcaCCuGCUCGc -3'
miRNA:   3'- ccaCCACGUGCCGgCUGc------GGuCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 135586 0.76 0.228526
Target:  5'- cGUGGc-CACGGCCGGCGCCGuGCUgGa -3'
miRNA:   3'- cCACCacGUGCCGGCUGCGGU-CGAgC- -5'
23570 5' -60.5 NC_005261.1 + 135035 0.68 0.582684
Target:  5'- --cGGcgGCGaGGCCGACGCCuGCggCGg -3'
miRNA:   3'- ccaCCa-CGUgCCGGCUGCGGuCGa-GC- -5'
23570 5' -60.5 NC_005261.1 + 134846 0.72 0.366997
Target:  5'- aGUGccgGCGCGGCUGGCGgCCGcGCUCGc -3'
miRNA:   3'- cCACca-CGUGCCGGCUGC-GGU-CGAGC- -5'
23570 5' -60.5 NC_005261.1 + 134753 0.66 0.720603
Target:  5'- cGUGGccccgcugGCGCGGUacuCGACGCgCGGCgCGg -3'
miRNA:   3'- cCACCa-------CGUGCCG---GCUGCG-GUCGaGC- -5'
23570 5' -60.5 NC_005261.1 + 134497 0.68 0.563075
Target:  5'- --cGGUGCGCcGCCGGCGCgucCGGCagCGg -3'
miRNA:   3'- ccaCCACGUGcCGGCUGCG---GUCGa-GC- -5'
23570 5' -60.5 NC_005261.1 + 134328 0.67 0.671811
Target:  5'- --cGGcgGCGCGGgCGcccGCGCCGcGCUCGc -3'
miRNA:   3'- ccaCCa-CGUGCCgGC---UGCGGU-CGAGC- -5'
23570 5' -60.5 NC_005261.1 + 134189 0.7 0.496145
Target:  5'- cGGaGGgccugGCGCGGCuCGGCGCgCGGgUCGc -3'
miRNA:   3'- -CCaCCa----CGUGCCG-GCUGCG-GUCgAGC- -5'
23570 5' -60.5 NC_005261.1 + 133840 0.69 0.534015
Target:  5'- --cGcGUGCGC-GCCGugGCCGGCgcgCGc -3'
miRNA:   3'- ccaC-CACGUGcCGGCugCGGUCGa--GC- -5'
23570 5' -60.5 NC_005261.1 + 133147 0.69 0.534015
Target:  5'- --cGGUGCGCGcucGCCGcCGUCGGCgUCGc -3'
miRNA:   3'- ccaCCACGUGC---CGGCuGCGGUCG-AGC- -5'
23570 5' -60.5 NC_005261.1 + 132982 0.66 0.691476
Target:  5'- cGGcGG-GCACGaGCCG--GCCAcGCUCGa -3'
miRNA:   3'- -CCaCCaCGUGC-CGGCugCGGU-CGAGC- -5'
23570 5' -60.5 NC_005261.1 + 131735 0.67 0.671811
Target:  5'- cGGUgGGUGCugcacGCGGaCgGcACGCCGGC-CGg -3'
miRNA:   3'- -CCA-CCACG-----UGCC-GgC-UGCGGUCGaGC- -5'
23570 5' -60.5 NC_005261.1 + 130512 0.71 0.415884
Target:  5'- cGUGGcgcagGCGCuGGCCGaagcGCGCCcGCUCGu -3'
miRNA:   3'- cCACCa----CGUG-CCGGC----UGCGGuCGAGC- -5'
23570 5' -60.5 NC_005261.1 + 128649 0.66 0.681663
Target:  5'- gGGUGGggGCugGGUgGGCGg-GGCUCa -3'
miRNA:   3'- -CCACCa-CGugCCGgCUGCggUCGAGc -5'
23570 5' -60.5 NC_005261.1 + 128418 0.75 0.239547
Target:  5'- gGGUGGgcucGCugGGCUGG-GCCAGCUgGg -3'
miRNA:   3'- -CCACCa---CGugCCGGCUgCGGUCGAgC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.