miRNA display CGI


Results 61 - 80 of 441 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 28737 0.66 0.93487
Target:  5'- cGGCGggcGCgGGCCCCGgccauuUGCGCu -3'
miRNA:   3'- -CCGUaguCG-CCGGGGUauuuc-ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 62298 0.66 0.93487
Target:  5'- aGGCcUCGuacacGCGGgCCaCGUAgcGUGUGCa -3'
miRNA:   3'- -CCGuAGU-----CGCCgGG-GUAUuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 36637 0.66 0.93487
Target:  5'- cGGCAaaGGCGGCgCgCGcGGAGgccacgGCGCg -3'
miRNA:   3'- -CCGUagUCGCCG-GgGUaUUUCa-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 85894 0.66 0.93487
Target:  5'- cGGCAgcgCGGCGGgCgCCAaggacggcgaGGAGUGCGa -3'
miRNA:   3'- -CCGUa--GUCGCCgG-GGUa---------UUUCACGCg -5'
23571 5' -54.3 NC_005261.1 + 108958 0.66 0.93487
Target:  5'- gGGCGUCAGCagcgGGCCCUcc--AGcgGCGg -3'
miRNA:   3'- -CCGUAGUCG----CCGGGGuauuUCa-CGCg -5'
23571 5' -54.3 NC_005261.1 + 103301 0.66 0.93487
Target:  5'- cGCGcCGGCcGCCCCccgc-GUGCGCc -3'
miRNA:   3'- cCGUaGUCGcCGGGGuauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 63725 0.66 0.93487
Target:  5'- uGGCccCGGCGccGCCCCG--AAGaGCGCc -3'
miRNA:   3'- -CCGuaGUCGC--CGGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 38759 0.66 0.93487
Target:  5'- uGGCcgCAGCGGCCagcgCCGccgcGGGUcggcccGCGCu -3'
miRNA:   3'- -CCGuaGUCGCCGG----GGUau--UUCA------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 12249 0.66 0.939799
Target:  5'- aGGCcauguuGCGGcCCCCGUcgccgagcGAAGUGCuGCc -3'
miRNA:   3'- -CCGuagu--CGCC-GGGGUA--------UUUCACG-CG- -5'
23571 5' -54.3 NC_005261.1 + 86272 0.66 0.94448
Target:  5'- aGCAgcgCGGCGGCgUCGUc-GGUgGCGCc -3'
miRNA:   3'- cCGUa--GUCGCCGgGGUAuuUCA-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 109134 0.66 0.93487
Target:  5'- cGGCGUCGGUccccgaguccccGGCCCCcgAGucccuaaauccAGUGUcgGCc -3'
miRNA:   3'- -CCGUAGUCG------------CCGGGGuaUU-----------UCACG--CG- -5'
23571 5' -54.3 NC_005261.1 + 20487 0.66 0.939799
Target:  5'- cGGCGUugggggCGGCGGCgCCAgc----GCGCg -3'
miRNA:   3'- -CCGUA------GUCGCCGgGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 28684 0.66 0.943102
Target:  5'- gGGCcgCGGCgguuguggcgagggGGCCCgCGgcGGGcGCGCa -3'
miRNA:   3'- -CCGuaGUCG--------------CCGGG-GUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 54544 0.66 0.939799
Target:  5'- cGGCGccgccUCGGCGGCgcgcugcgcgCCCA---GGcGCGCg -3'
miRNA:   3'- -CCGU-----AGUCGCCG----------GGGUauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 16410 0.66 0.939799
Target:  5'- cGCcgCGGCGGCCCgCAgagcccAGccacGCGCc -3'
miRNA:   3'- cCGuaGUCGCCGGG-GUauu---UCa---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 81420 0.66 0.94448
Target:  5'- cGGCAcCAggaacaccGUGGCCCgCugccgGAAGUGgGCa -3'
miRNA:   3'- -CCGUaGU--------CGCCGGG-Gua---UUUCACgCG- -5'
23571 5' -54.3 NC_005261.1 + 110031 0.66 0.94448
Target:  5'- cGGCAgcggCGGCgaGGCCgCCGgcuucgGCGCg -3'
miRNA:   3'- -CCGUa---GUCG--CCGG-GGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 43627 0.66 0.93487
Target:  5'- cGGCGagGGCGcGCgCUCGUGggcgGAGgGCGCg -3'
miRNA:   3'- -CCGUagUCGC-CG-GGGUAU----UUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 65484 0.66 0.94448
Target:  5'- gGGCAU--GCGGCCcgCCAUGcGGgccgcccGCGCg -3'
miRNA:   3'- -CCGUAguCGCCGG--GGUAUuUCa------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 115541 0.66 0.939799
Target:  5'- aGCAUCGGCGGCUggugcagguCCGUGug--GCaGCa -3'
miRNA:   3'- cCGUAGUCGCCGG---------GGUAUuucaCG-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.