miRNA display CGI


Results 61 - 80 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 20231 0.66 0.939799
Target:  5'- aGCGUcCAGCGccGCCgCCGUcaggccgguGUGCGCg -3'
miRNA:   3'- cCGUA-GUCGC--CGG-GGUAuuu------CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 20487 0.66 0.939799
Target:  5'- cGGCGUugggggCGGCGGCgCCAgc----GCGCg -3'
miRNA:   3'- -CCGUA------GUCGCCGgGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 20550 0.66 0.94448
Target:  5'- cGGCcUCGccGCGGgCCCGgccGG-GCGCg -3'
miRNA:   3'- -CCGuAGU--CGCCgGGGUauuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 20566 0.69 0.814607
Target:  5'- gGGCugcgCAGCGGCgCCGgcg---GCGCg -3'
miRNA:   3'- -CCGua--GUCGCCGgGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 21804 0.77 0.390702
Target:  5'- cGGCgacacGUCGGgGGCCCCGacgccuaUAAgcgGGUGCGCg -3'
miRNA:   3'- -CCG-----UAGUCgCCGGGGU-------AUU---UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 22058 0.69 0.831999
Target:  5'- gGGguUCAGgGGCUCCGgcggggcucGAGGggGCGCc -3'
miRNA:   3'- -CCguAGUCgCCGGGGUa--------UUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 22662 0.69 0.840415
Target:  5'- cGGCGccUgGGCGGCgCCCG---AGUGcCGCc -3'
miRNA:   3'- -CCGU--AgUCGCCG-GGGUauuUCAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 22752 0.7 0.787246
Target:  5'- gGGCggCGGCGGCCCaCGcgucUGGGG-GCGg -3'
miRNA:   3'- -CCGuaGUCGCCGGG-GU----AUUUCaCGCg -5'
23571 5' -54.3 NC_005261.1 + 23145 0.74 0.573583
Target:  5'- cGCAUU--CGGCCCCAaAGAGUGgGCc -3'
miRNA:   3'- cCGUAGucGCCGGGGUaUUUCACgCG- -5'
23571 5' -54.3 NC_005261.1 + 23242 0.7 0.777822
Target:  5'- gGGCcgCGGCGGCCggcccgCCAaUAAAgacgcGUGUGCa -3'
miRNA:   3'- -CCGuaGUCGCCGG------GGU-AUUU-----CACGCG- -5'
23571 5' -54.3 NC_005261.1 + 23456 0.71 0.718765
Target:  5'- gGGCAgaaGGCgccaGGCCCgCGgcggcGAGUGCGCg -3'
miRNA:   3'- -CCGUag-UCG----CCGGG-GUau---UUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 24116 0.66 0.929692
Target:  5'- aGGuCAUCGGCGGCCg---AGAGgaaCGCg -3'
miRNA:   3'- -CC-GUAGUCGCCGGgguaUUUCac-GCG- -5'
23571 5' -54.3 NC_005261.1 + 24750 0.68 0.848634
Target:  5'- cGCAUCAGCGGCag-GUucGG-GCGCa -3'
miRNA:   3'- cCGUAGUCGCCGgggUAuuUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 25263 0.77 0.374634
Target:  5'- cGGCggUGGCGGCCgCCGUGGAcaGCGCg -3'
miRNA:   3'- -CCGuaGUCGCCGG-GGUAUUUcaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 26106 0.71 0.698357
Target:  5'- aGGCAgaucCAGCGGCCggGUAAGcagGCGCg -3'
miRNA:   3'- -CCGUa---GUCGCCGGggUAUUUca-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 27681 0.69 0.814607
Target:  5'- cGgGUguGCGGCCUgGUcc-GUGCGCg -3'
miRNA:   3'- cCgUAguCGCCGGGgUAuuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 27859 0.67 0.912666
Target:  5'- cGCAgcgccaugCGGCGGUCgCCcgAguuggaaaucAGGUGCGCg -3'
miRNA:   3'- cCGUa-------GUCGCCGG-GGuaU----------UUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 28078 0.68 0.86445
Target:  5'- cGGUggCGGCGGCCaugccgaugaCGUcggcGGGGUGCGUc -3'
miRNA:   3'- -CCGuaGUCGCCGGg---------GUA----UUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 28203 0.68 0.87721
Target:  5'- cGGCcUCGccgccgcugccGCGGCCCCAgcuaccccccgGCGCg -3'
miRNA:   3'- -CCGuAGU-----------CGCCGGGGUauuuca-----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 28400 0.74 0.542838
Target:  5'- cGGCAcgccagauUCGGCGGCCgCCGcggcgGAAGcgGCGCc -3'
miRNA:   3'- -CCGU--------AGUCGCCGG-GGUa----UUUCa-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.