miRNA display CGI


Results 61 - 80 of 441 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 117974 0.73 0.583927
Target:  5'- cGGCGguUCu-CGGCgCCCAUGGAGcGCGCg -3'
miRNA:   3'- -CCGU--AGucGCCG-GGGUAUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 117931 0.66 0.93487
Target:  5'- aGGCcggCuGCGGCCC------GUGCGCg -3'
miRNA:   3'- -CCGua-GuCGCCGGGguauuuCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 117439 0.67 0.91859
Target:  5'- gGGguUcCGGCGGCUgCugcagAAGGUGCGg -3'
miRNA:   3'- -CCguA-GUCGCCGGgGua---UUUCACGCg -5'
23571 5' -54.3 NC_005261.1 + 116423 0.73 0.625591
Target:  5'- aGGCGUCGG-GGCCCCcgAc-GUGuCGCc -3'
miRNA:   3'- -CCGUAGUCgCCGGGGuaUuuCAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 116347 0.66 0.929692
Target:  5'- uGGgGgCGGgGGCCCCGc-GGGcGCGCg -3'
miRNA:   3'- -CCgUaGUCgCCGGGGUauUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 115850 0.68 0.848634
Target:  5'- uGGCccgcGCGGCCCCcgccGAG-GCGCg -3'
miRNA:   3'- -CCGuaguCGCCGGGGuau-UUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 115541 0.66 0.939799
Target:  5'- aGCAUCGGCGGCUggugcagguCCGUGug--GCaGCa -3'
miRNA:   3'- cCGUAGUCGCCGG---------GGUAUuucaCG-CG- -5'
23571 5' -54.3 NC_005261.1 + 115107 0.66 0.924266
Target:  5'- cGGCcUCGGCGGCgcugCCCAcg----GCGCc -3'
miRNA:   3'- -CCGuAGUCGCCG----GGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 114997 0.67 0.906495
Target:  5'- cGGCcgCcGCGGCCCCGgcccc-GCGg -3'
miRNA:   3'- -CCGuaGuCGCCGGGGUauuucaCGCg -5'
23571 5' -54.3 NC_005261.1 + 114070 0.69 0.840415
Target:  5'- cGGC-UCAGCGGCgCCGagcUGGAGUuuuacCGCu -3'
miRNA:   3'- -CCGuAGUCGCCGgGGU---AUUUCAc----GCG- -5'
23571 5' -54.3 NC_005261.1 + 113074 0.67 0.906495
Target:  5'- cGC-UCGGCcGCCCCGgGAAGUGaggaCGCu -3'
miRNA:   3'- cCGuAGUCGcCGGGGUaUUUCAC----GCG- -5'
23571 5' -54.3 NC_005261.1 + 112398 0.68 0.872034
Target:  5'- gGGCAgcgAGCGGCUCUGUuccg-GCGCg -3'
miRNA:   3'- -CCGUag-UCGCCGGGGUAuuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 112067 0.69 0.831999
Target:  5'- gGGCgugcccucGUCGGCgagGGCgCCAcguGGUGCGCg -3'
miRNA:   3'- -CCG--------UAGUCG---CCGgGGUauuUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 111692 0.67 0.906495
Target:  5'- cGGCgauGUC-GUGGaCCgCAUGAAG-GCGCa -3'
miRNA:   3'- -CCG---UAGuCGCC-GGgGUAUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 110031 0.66 0.94448
Target:  5'- cGGCAgcggCGGCgaGGCCgCCGgcuucgGCGCg -3'
miRNA:   3'- -CCGUa---GUCG--CCGG-GGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 109823 0.66 0.929692
Target:  5'- cGCcgCGGCGGCCgCCGaaucugGCGUg -3'
miRNA:   3'- cCGuaGUCGCCGG-GGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 109491 0.69 0.840415
Target:  5'- cGGCGUCcucuGgGGCCUCG-GAGG-GCGCc -3'
miRNA:   3'- -CCGUAGu---CgCCGGGGUaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 109341 0.67 0.900079
Target:  5'- cGGgGUCGGCGGCCgCGUcgccGUccagccgcucgaGCGCg -3'
miRNA:   3'- -CCgUAGUCGCCGGgGUAuuu-CA------------CGCG- -5'
23571 5' -54.3 NC_005261.1 + 109236 0.7 0.787246
Target:  5'- cGGCcccggaGUCGGCGGCCCCA--GAGUcauCGg -3'
miRNA:   3'- -CCG------UAGUCGCCGGGGUauUUCAc--GCg -5'
23571 5' -54.3 NC_005261.1 + 109188 0.69 0.840415
Target:  5'- cGGCggCGGCGGCCCCc----GUGUc- -3'
miRNA:   3'- -CCGuaGUCGCCGGGGuauuuCACGcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.