miRNA display CGI


Results 61 - 80 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23571 5' -54.3 NC_005261.1 + 73536 0.75 0.501759
Target:  5'- cGCggCGGCGGCCCCGgGAcgcgcccGGUGcCGCa -3'
miRNA:   3'- cCGuaGUCGCCGGGGUaUU-------UCAC-GCG- -5'
23571 5' -54.3 NC_005261.1 + 104850 0.75 0.502745
Target:  5'- cGGCGgcugCGGCGGCCCgCAgcccg-GCGCg -3'
miRNA:   3'- -CCGUa---GUCGCCGGG-GUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 43500 0.73 0.594308
Target:  5'- cGGCGUCGGUGuccccGCCCCG-GAGGUagcgGCGCu -3'
miRNA:   3'- -CCGUAGUCGC-----CGGGGUaUUUCA----CGCG- -5'
23571 5' -54.3 NC_005261.1 + 135981 0.73 0.594308
Target:  5'- aGCGcCGGCGGCCUgaGUGGccgccGGUGCGCg -3'
miRNA:   3'- cCGUaGUCGCCGGGg-UAUU-----UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 85543 0.73 0.601591
Target:  5'- cGGCAgCGGCgcgcccgcgagcagGGCCCgCucGAAGUGCGCg -3'
miRNA:   3'- -CCGUaGUCG--------------CCGGG-GuaUUUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 33057 0.73 0.615147
Target:  5'- cGGCggCGGCgGGCCCCGUGgacgccgcccucGAGccgcgaggaccUGCGCg -3'
miRNA:   3'- -CCGuaGUCG-CCGGGGUAU------------UUC-----------ACGCG- -5'
23571 5' -54.3 NC_005261.1 + 134863 0.73 0.615147
Target:  5'- cGGCcgCGcucGCGGCCCU--GAAGgccgGCGCg -3'
miRNA:   3'- -CCGuaGU---CGCCGGGGuaUUUCa---CGCG- -5'
23571 5' -54.3 NC_005261.1 + 35239 0.73 0.625591
Target:  5'- cGCGU-GGCGGCCgCCGUGucGcGCGCg -3'
miRNA:   3'- cCGUAgUCGCCGG-GGUAUuuCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 59661 0.73 0.625591
Target:  5'- gGGCGaacUCGGCGGUCCCGgc----GCGCg -3'
miRNA:   3'- -CCGU---AGUCGCCGGGGUauuucaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 7589 0.73 0.625591
Target:  5'- cGCGUCGGCGagcgcacgcgcGCCCCGcgcgcuguUGAAG-GCGCa -3'
miRNA:   3'- cCGUAGUCGC-----------CGGGGU--------AUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 117974 0.73 0.583927
Target:  5'- cGGCGguUCu-CGGCgCCCAUGGAGcGCGCg -3'
miRNA:   3'- -CCGU--AGucGCCG-GGGUAUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 106307 0.73 0.583927
Target:  5'- cGGCAgagccgcagCGGCGGCgCCCcgggGUAGAGccGCGCg -3'
miRNA:   3'- -CCGUa--------GUCGCCG-GGG----UAUUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 34783 0.75 0.512655
Target:  5'- gGGCG-CGGCGGCCgaCCGcGAGGcGCGCg -3'
miRNA:   3'- -CCGUaGUCGCCGG--GGUaUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 102358 0.74 0.542838
Target:  5'- aGGCGUUcucgcacccaGGCGGCCaccuCCAUuucGGUGCGCc -3'
miRNA:   3'- -CCGUAG----------UCGCCGG----GGUAuu-UCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 5835 0.74 0.542838
Target:  5'- aGGCGUCggcGGCGGCCUCGggGAAcaGCGCc -3'
miRNA:   3'- -CCGUAG---UCGCCGGGGUa-UUUcaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 28400 0.74 0.542838
Target:  5'- cGGCAcgccagauUCGGCGGCCgCCGcggcgGAAGcgGCGCc -3'
miRNA:   3'- -CCGU--------AGUCGCCGG-GGUa----UUUCa-CGCG- -5'
23571 5' -54.3 NC_005261.1 + 67854 0.74 0.563283
Target:  5'- cGUGUCGGCcacGGCgCCGUGGAG-GCGCg -3'
miRNA:   3'- cCGUAGUCG---CCGgGGUAUUUCaCGCG- -5'
23571 5' -54.3 NC_005261.1 + 127663 0.74 0.573583
Target:  5'- cGCAUU--CGGCCCCAaAGAGUGgGCc -3'
miRNA:   3'- cCGUAGucGCCGGGGUaUUUCACgCG- -5'
23571 5' -54.3 NC_005261.1 + 55226 0.74 0.573583
Target:  5'- cGGCGaCGGCGGCUC-----GGUGCGCg -3'
miRNA:   3'- -CCGUaGUCGCCGGGguauuUCACGCG- -5'
23571 5' -54.3 NC_005261.1 + 78890 0.73 0.583927
Target:  5'- uGGCGaCGGCGGCgaCCCGgcGGGcGCGCa -3'
miRNA:   3'- -CCGUaGUCGCCG--GGGUauUUCaCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.