miRNA display CGI


Results 61 - 80 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 30193 0.72 0.327811
Target:  5'- ---aGGCGGCCGCCGCGcuggaGGCggccgcGCUGGc -3'
miRNA:   3'- gcagCUGUCGGCGGCGC-----CCGa-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 87788 0.72 0.313804
Target:  5'- cCGUCu-UGGCCGCCGCGuccauggccGGCgggGCUGGg -3'
miRNA:   3'- -GCAGcuGUCGGCGGCGC---------CCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 63007 0.72 0.313804
Target:  5'- -cUCGGCGGCCGCgcccgCGCGGGC-GCcGGc -3'
miRNA:   3'- gcAGCUGUCGGCG-----GCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 42746 0.72 0.300254
Target:  5'- gGUCGAU-GCCGCCGCGGGCc-UUGa -3'
miRNA:   3'- gCAGCUGuCGGCGGCGCCCGacGACc -5'
23573 3' -62.2 NC_005261.1 + 67316 0.72 0.313804
Target:  5'- cCGUCGGCcGCCGCCGCGcucaGCcGCaGGa -3'
miRNA:   3'- -GCAGCUGuCGGCGGCGCc---CGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 66794 0.72 0.300254
Target:  5'- gCGgCGGCuGCgCGCCGCGGGCccggGCcGGg -3'
miRNA:   3'- -GCaGCUGuCG-GCGGCGCCCGa---CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 49243 0.72 0.306972
Target:  5'- gGUCGGCcGCCGCCGC-GGCgGCgucGGc -3'
miRNA:   3'- gCAGCUGuCGGCGGCGcCCGaCGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 38008 0.72 0.327811
Target:  5'- --cCGGCGGUgGCCGagcucuacgcgGGGCUGCUGGc -3'
miRNA:   3'- gcaGCUGUCGgCGGCg----------CCCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 97567 0.72 0.313804
Target:  5'- --cCGACGG-CGUCGCGGaGCUGCUGu -3'
miRNA:   3'- gcaGCUGUCgGCGGCGCC-CGACGACc -5'
23573 3' -62.2 NC_005261.1 + 78850 0.72 0.32075
Target:  5'- -cUCGGC-GCCGUggCGCGGGC-GCUGGc -3'
miRNA:   3'- gcAGCUGuCGGCG--GCGCCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 33416 0.72 0.32075
Target:  5'- cCG-CGAC-GCCGCUGCGGaGCgggacccGCUGGa -3'
miRNA:   3'- -GCaGCUGuCGGCGGCGCC-CGa------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 38380 0.72 0.32075
Target:  5'- gCG-CGGCGGCCgguGCCGCuGGGCgGCgGGg -3'
miRNA:   3'- -GCaGCUGUCGG---CGGCG-CCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 70790 0.72 0.300254
Target:  5'- gCGgacCGGCuGCCcuuugggcgcugGCCGCGGGCgcUGCUGGc -3'
miRNA:   3'- -GCa--GCUGuCGG------------CGGCGCCCG--ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 90538 0.72 0.300254
Target:  5'- cCGcCGACGcGgCGCCGCGGGCggccgUGCUGc -3'
miRNA:   3'- -GCaGCUGU-CgGCGGCGCCCG-----ACGACc -5'
23573 3' -62.2 NC_005261.1 + 129441 0.71 0.357195
Target:  5'- uCGgCGgcuGCAGCCGCCGagGGGCagaGCUGGc -3'
miRNA:   3'- -GCaGC---UGUCGGCGGCg-CCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 87450 0.71 0.357195
Target:  5'- cCGgggCGGCcGCCGCCGCGGuGUgcGCUGa -3'
miRNA:   3'- -GCa--GCUGuCGGCGGCGCC-CGa-CGACc -5'
23573 3' -62.2 NC_005261.1 + 38834 0.71 0.357953
Target:  5'- uCGUgCGGCAGCCGCCcaGCGaGGUgcagacggucaacgcGCUGGa -3'
miRNA:   3'- -GCA-GCUGUCGGCGG--CGC-CCGa--------------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 33163 0.71 0.372565
Target:  5'- aGUCGGCGGaccCUGCCG-GGGaggGCUGGg -3'
miRNA:   3'- gCAGCUGUC---GGCGGCgCCCga-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 136787 0.71 0.372565
Target:  5'- aCGcCGAgGcGCCGCCGCuGG-UGCUGGa -3'
miRNA:   3'- -GCaGCUgU-CGGCGGCGcCCgACGACC- -5'
23573 3' -62.2 NC_005261.1 + 127733 0.71 0.375692
Target:  5'- aG-CGGCGGCCGCCGCaaaagccggugcagcGGGCcggccUGCUcGGg -3'
miRNA:   3'- gCaGCUGUCGGCGGCG---------------CCCG-----ACGA-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.