miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 3' -59.9 NC_005261.1 + 67505 0.67 0.700365
Target:  5'- cGCGCGUaGUaGGCCagCGUCgccgCGGCGc -3'
miRNA:   3'- -UGUGCAgCAgCCGGagGCAGa---GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 67843 0.66 0.757376
Target:  5'- gGCGCGUCGugcgugUCGGCCacggcgCCGUggaGGCGc -3'
miRNA:   3'- -UGUGCAGC------AGCCGGa-----GGCAgagCCGC- -5'
23574 3' -59.9 NC_005261.1 + 68888 0.68 0.651302
Target:  5'- cCGCGUCGUCGccGUCUCCGUCgcugUCGcCGu -3'
miRNA:   3'- uGUGCAGCAGC--CGGAGGCAG----AGCcGC- -5'
23574 3' -59.9 NC_005261.1 + 69036 0.67 0.680845
Target:  5'- -gACGUCGUUGGCCg-CGUCcgcgaCGGUGc -3'
miRNA:   3'- ugUGCAGCAGCCGGagGCAGa----GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 69632 0.74 0.299137
Target:  5'- cCACGcCGUCGGCCccgcucccgcggcCCGcCUCGGCGg -3'
miRNA:   3'- uGUGCaGCAGCCGGa------------GGCaGAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 69918 0.66 0.728272
Target:  5'- gGCACGUCGaagCGGCCgcagaggUCCG-CgcccgCGGCc -3'
miRNA:   3'- -UGUGCAGCa--GCCGG-------AGGCaGa----GCCGc -5'
23574 3' -59.9 NC_005261.1 + 70021 0.74 0.301826
Target:  5'- cGC-CGUUGUCGGCCgcgCCGg--CGGCGg -3'
miRNA:   3'- -UGuGCAGCAGCCGGa--GGCagaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 70581 0.68 0.661174
Target:  5'- cGCGCG-CGgacgggCGGCC-CgCGuUCUCGGCGu -3'
miRNA:   3'- -UGUGCaGCa-----GCCGGaG-GC-AGAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 71052 0.69 0.601874
Target:  5'- cCACGcCGUgGGCCagCCGcCgcgCGGCGg -3'
miRNA:   3'- uGUGCaGCAgCCGGa-GGCaGa--GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 71327 0.67 0.71005
Target:  5'- aGCACGUaGcCGGCCgcgagCgCGUCcUCGGUGa -3'
miRNA:   3'- -UGUGCAgCaGCCGGa----G-GCAG-AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 75328 0.66 0.76382
Target:  5'- cGCGCGgagcccugugaccuUCGUCGGCCUCgUGgagcagCUgcCGGCGu -3'
miRNA:   3'- -UGUGC--------------AGCAGCCGGAG-GCa-----GA--GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 75552 0.67 0.690628
Target:  5'- gGCGCGUgcagcuggcggaCGUggcgcUGGCCUCCuUCUCGGUc -3'
miRNA:   3'- -UGUGCA------------GCA-----GCCGGAGGcAGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 79798 0.66 0.775642
Target:  5'- uACGCGUgCGUgGGCUUCUcg--CGGCGg -3'
miRNA:   3'- -UGUGCA-GCAgCCGGAGGcagaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 80034 0.66 0.729224
Target:  5'- -gGCGUCGcCGucGCCgCCGUCgccacuggCGGCGg -3'
miRNA:   3'- ugUGCAGCaGC--CGGaGGCAGa-------GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 80255 0.66 0.748084
Target:  5'- gGCGCGgccgCG-CGcGCCUgCGUCgcCGGCGu -3'
miRNA:   3'- -UGUGCa---GCaGC-CGGAgGCAGa-GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 81331 0.66 0.766565
Target:  5'- cGC-CGUCGUCGGgg-CCGUCggcggGGCGg -3'
miRNA:   3'- -UGuGCAGCAGCCggaGGCAGag---CCGC- -5'
23574 3' -59.9 NC_005261.1 + 81432 0.73 0.3444
Target:  5'- -gGCGUCGUCGGCCgCCccg-CGGCGg -3'
miRNA:   3'- ugUGCAGCAGCCGGaGGcagaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 82056 0.66 0.751813
Target:  5'- cGCGCGUCGUCcuccccgcgGGCC-CCGccgcugccgccaccCUCGGCc -3'
miRNA:   3'- -UGUGCAGCAG---------CCGGaGGCa-------------GAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 85540 0.72 0.415987
Target:  5'- cGCGCG-CGggCGG-CUCCGUCUgCGGCGc -3'
miRNA:   3'- -UGUGCaGCa-GCCgGAGGCAGA-GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 86233 0.67 0.719672
Target:  5'- --uCGUCGUCGuCCUCgaaGUCggCGGCGg -3'
miRNA:   3'- uguGCAGCAGCcGGAGg--CAGa-GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.