Results 41 - 60 of 126 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23574 | 5' | -56.3 | NC_005261.1 | + | 15029 | 0.67 | 0.810724 |
Target: 5'- gGCGgGU-GCCgGGGGcguAGCGGggGGGg -3' miRNA: 3'- aUGCgCAuCGGgUCCU---UCGCCuaCUC- -5' |
|||||||
23574 | 5' | -56.3 | NC_005261.1 | + | 97717 | 0.67 | 0.825592 |
Target: 5'- gGCGgGUGGCCCGGGcGGGCuaacggcuggcaggGGcgGGGc -3' miRNA: 3'- aUGCgCAUCGGGUCC-UUCG--------------CCuaCUC- -5' |
|||||||
23574 | 5' | -56.3 | NC_005261.1 | + | 1006 | 0.67 | 0.828162 |
Target: 5'- gGgGCGgggGGC--GGGggGCGGGUGGGc -3' miRNA: 3'- aUgCGCa--UCGggUCCuuCGCCUACUC- -5' |
|||||||
23574 | 5' | -56.3 | NC_005261.1 | + | 23507 | 0.67 | 0.828162 |
Target: 5'- gGCGCG-GGCCCuGGGAGCacgcggucGGgcGAGc -3' miRNA: 3'- aUGCGCaUCGGGuCCUUCG--------CCuaCUC- -5' |
|||||||
23574 | 5' | -56.3 | NC_005261.1 | + | 72296 | 0.67 | 0.79262 |
Target: 5'- aGCGCGUGuaCCAGGccacGCGGGUGc- -3' miRNA: 3'- aUGCGCAUcgGGUCCuu--CGCCUACuc -5' |
|||||||
23574 | 5' | -56.3 | NC_005261.1 | + | 33702 | 0.67 | 0.79262 |
Target: 5'- cGCGCGgGGCCCGcugcacGaGggGCGG-UGGGg -3' miRNA: 3'- aUGCGCaUCGGGU------C-CuuCGCCuACUC- -5' |
|||||||
23574 | 5' | -56.3 | NC_005261.1 | + | 624 | 0.67 | 0.79262 |
Target: 5'- cGCGCGUugaAGUCUAuGGgcGCgGGGUGGGg -3' miRNA: 3'- aUGCGCA---UCGGGU-CCuuCG-CCUACUC- -5' |
|||||||
23574 | 5' | -56.3 | NC_005261.1 | + | 62494 | 0.67 | 0.79262 |
Target: 5'- cAgGCGgcGCaCCAGGAgcAGCGcGGUGAu -3' miRNA: 3'- aUgCGCauCG-GGUCCU--UCGC-CUACUc -5' |
|||||||
23574 | 5' | -56.3 | NC_005261.1 | + | 114353 | 0.67 | 0.801751 |
Target: 5'- gGCGCGUGGCCgCGGccGAgucGGUGGccGAGa -3' miRNA: 3'- aUGCGCAUCGG-GUC--CU---UCGCCuaCUC- -5' |
|||||||
23574 | 5' | -56.3 | NC_005261.1 | + | 137433 | 0.68 | 0.78334 |
Target: 5'- cGCGCGUggggggcggcGGCgCGGGggGgGGgcGGGg -3' miRNA: 3'- aUGCGCA----------UCGgGUCCuuCgCCuaCUC- -5' |
|||||||
23574 | 5' | -56.3 | NC_005261.1 | + | 127482 | 0.68 | 0.78334 |
Target: 5'- gACGaCGaGGCCgAGGAccgggaggaGGCGGcgGAGg -3' miRNA: 3'- aUGC-GCaUCGGgUCCU---------UCGCCuaCUC- -5' |
|||||||
23574 | 5' | -56.3 | NC_005261.1 | + | 31694 | 0.68 | 0.78334 |
Target: 5'- gACGCGgccgccGCCgAGGAGGCGGugcUGGc -3' miRNA: 3'- aUGCGCau----CGGgUCCUUCGCCu--ACUc -5' |
|||||||
23574 | 5' | -56.3 | NC_005261.1 | + | 65097 | 0.68 | 0.764369 |
Target: 5'- gGCGCGagcccGGCCCGGGGAccgcGCGGAcgcGGGc -3' miRNA: 3'- aUGCGCa----UCGGGUCCUU----CGCCUa--CUC- -5' |
|||||||
23574 | 5' | -56.3 | NC_005261.1 | + | 55681 | 0.68 | 0.764369 |
Target: 5'- gGCGCGcGGCCgcgggcgaggaGGGggGCgaGGAUGGGg -3' miRNA: 3'- aUGCGCaUCGGg----------UCCuuCG--CCUACUC- -5' |
|||||||
23574 | 5' | -56.3 | NC_005261.1 | + | 122243 | 0.68 | 0.754698 |
Target: 5'- aGCGCGcuGCCCGGGuGAGCGGcccGGGc -3' miRNA: 3'- aUGCGCauCGGGUCC-UUCGCCua-CUC- -5' |
|||||||
23574 | 5' | -56.3 | NC_005261.1 | + | 98717 | 0.68 | 0.754698 |
Target: 5'- gGCGCGcGGCCCGGGccucuuCGGgcGAGg -3' miRNA: 3'- aUGCGCaUCGGGUCCuuc---GCCuaCUC- -5' |
|||||||
23574 | 5' | -56.3 | NC_005261.1 | + | 4097 | 0.68 | 0.754698 |
Target: 5'- cAgGCGcAGCCCAGGggGUcgaGGcgGAa -3' miRNA: 3'- aUgCGCaUCGGGUCCuuCG---CCuaCUc -5' |
|||||||
23574 | 5' | -56.3 | NC_005261.1 | + | 55794 | 0.68 | 0.744916 |
Target: 5'- gGCGCGgggccGGCCgGGGgcGCGGAcggcGGGg -3' miRNA: 3'- aUGCGCa----UCGGgUCCuuCGCCUa---CUC- -5' |
|||||||
23574 | 5' | -56.3 | NC_005261.1 | + | 68826 | 0.68 | 0.741961 |
Target: 5'- gGCGCGUgugucgggaggccaGGCUCAGGAcGGCGGuaucucGAGg -3' miRNA: 3'- aUGCGCA--------------UCGGGUCCU-UCGCCua----CUC- -5' |
|||||||
23574 | 5' | -56.3 | NC_005261.1 | + | 34694 | 0.68 | 0.735032 |
Target: 5'- gGCcCGggGGCCgAGGAGGCGGcgGAu -3' miRNA: 3'- aUGcGCa-UCGGgUCCUUCGCCuaCUc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home