Results 41 - 60 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23574 | 5' | -56.3 | NC_005261.1 | + | 34812 | 0.7 | 0.622317 |
Target: 5'- cGCGCGUGGCCgCGGcccgcGCGGAgcugGAGg -3' miRNA: 3'- aUGCGCAUCGG-GUCcuu--CGCCUa---CUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 34868 | 0.71 | 0.570681 |
Target: 5'- cGCGCGgccgAGCUgGGGGAGCGGcgcgcgGAGc -3' miRNA: 3'- aUGCGCa---UCGGgUCCUUCGCCua----CUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 38347 | 0.66 | 0.860777 |
Target: 5'- gGCGCGcacGCCCAGcgggccuuuGggGCGGccGGGa -3' miRNA: 3'- aUGCGCau-CGGGUC---------CuuCGCCuaCUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 42658 | 0.66 | 0.852925 |
Target: 5'- -uCGCcggGGCCCAuGAAGCGGAacGAGa -3' miRNA: 3'- auGCGca-UCGGGUcCUUCGCCUa-CUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 44754 | 0.69 | 0.704867 |
Target: 5'- cUGCGCGcgaCCCGGGA-GCGGAgcggGAGc -3' miRNA: 3'- -AUGCGCaucGGGUCCUuCGCCUa---CUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 46042 | 0.69 | 0.684424 |
Target: 5'- gGCGCGguagagGGUCCAGGGcAGCGGGa--- -3' miRNA: 3'- aUGCGCa-----UCGGGUCCU-UCGCCUacuc -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 46633 | 0.7 | 0.622317 |
Target: 5'- gGCGCcgacgguGCCCAGGAGGUGGGaGAa -3' miRNA: 3'- aUGCGcau----CGGGUCCUUCGCCUaCUc -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 46697 | 0.69 | 0.684424 |
Target: 5'- cGCGCGUAGCCCGGGuccuCGGccauguccGAGa -3' miRNA: 3'- aUGCGCAUCGGGUCCuuc-GCCua------CUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 46835 | 0.68 | 0.754698 |
Target: 5'- cGCGCGU-GCUCGGGAA-CGaGGUGGGc -3' miRNA: 3'- aUGCGCAuCGGGUCCUUcGC-CUACUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 47771 | 0.7 | 0.622317 |
Target: 5'- gGCGCGUcuCCCGGuaGAAGCGGAaGGGc -3' miRNA: 3'- aUGCGCAucGGGUC--CUUCGCCUaCUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 47866 | 0.68 | 0.764369 |
Target: 5'- --aGCGUAGCcagcggcagcguCCGGGGAGCGGcgGcGg -3' miRNA: 3'- augCGCAUCG------------GGUCCUUCGCCuaCuC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 50298 | 0.66 | 0.868416 |
Target: 5'- gGCGCGcGGCuCCAGGcccCGGGUGGc -3' miRNA: 3'- aUGCGCaUCG-GGUCCuucGCCUACUc -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 53782 | 0.66 | 0.868416 |
Target: 5'- aGCGCGUggcugcgcGGCCCGGG-GGCuGGucgccgGAGg -3' miRNA: 3'- aUGCGCA--------UCGGGUCCuUCG-CCua----CUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 53835 | 0.66 | 0.875838 |
Target: 5'- cUGCGCGagcuggAGCUCgAGGcGGCGGccGAGg -3' miRNA: 3'- -AUGCGCa-----UCGGG-UCCuUCGCCuaCUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 55681 | 0.68 | 0.764369 |
Target: 5'- gGCGCGcGGCCgcgggcgaggaGGGggGCgaGGAUGGGg -3' miRNA: 3'- aUGCGCaUCGGg----------UCCuuCG--CCUACUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 55794 | 0.68 | 0.744916 |
Target: 5'- gGCGCGgggccGGCCgGGGgcGCGGAcggcGGGg -3' miRNA: 3'- aUGCGCa----UCGGgUCCuuCGCCUa---CUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 56144 | 0.68 | 0.743932 |
Target: 5'- gGCGCG-GGCCgAGGGuggcggcAGCGGcgGGGc -3' miRNA: 3'- aUGCGCaUCGGgUCCU-------UCGCCuaCUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 56337 | 0.79 | 0.206148 |
Target: 5'- -cCGCGUucaugcuggcGGCCgCAGGggGCGGGUGGGu -3' miRNA: 3'- auGCGCA----------UCGG-GUCCuuCGCCUACUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 58289 | 0.66 | 0.844867 |
Target: 5'- gGC-CGgcGCgCCGGGggGCGcGggGAGg -3' miRNA: 3'- aUGcGCauCG-GGUCCuuCGC-CuaCUC- -5' |
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23574 | 5' | -56.3 | NC_005261.1 | + | 58511 | 0.75 | 0.365213 |
Target: 5'- gGCGCccgcGUCCAGGAGGCGGAUcGAGc -3' miRNA: 3'- aUGCGcau-CGGGUCCUUCGCCUA-CUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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