miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 5' -56.3 NC_005261.1 + 34812 0.7 0.622317
Target:  5'- cGCGCGUGGCCgCGGcccgcGCGGAgcugGAGg -3'
miRNA:   3'- aUGCGCAUCGG-GUCcuu--CGCCUa---CUC- -5'
23574 5' -56.3 NC_005261.1 + 34868 0.71 0.570681
Target:  5'- cGCGCGgccgAGCUgGGGGAGCGGcgcgcgGAGc -3'
miRNA:   3'- aUGCGCa---UCGGgUCCUUCGCCua----CUC- -5'
23574 5' -56.3 NC_005261.1 + 38347 0.66 0.860777
Target:  5'- gGCGCGcacGCCCAGcgggccuuuGggGCGGccGGGa -3'
miRNA:   3'- aUGCGCau-CGGGUC---------CuuCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 42658 0.66 0.852925
Target:  5'- -uCGCcggGGCCCAuGAAGCGGAacGAGa -3'
miRNA:   3'- auGCGca-UCGGGUcCUUCGCCUa-CUC- -5'
23574 5' -56.3 NC_005261.1 + 44754 0.69 0.704867
Target:  5'- cUGCGCGcgaCCCGGGA-GCGGAgcggGAGc -3'
miRNA:   3'- -AUGCGCaucGGGUCCUuCGCCUa---CUC- -5'
23574 5' -56.3 NC_005261.1 + 46042 0.69 0.684424
Target:  5'- gGCGCGguagagGGUCCAGGGcAGCGGGa--- -3'
miRNA:   3'- aUGCGCa-----UCGGGUCCU-UCGCCUacuc -5'
23574 5' -56.3 NC_005261.1 + 46633 0.7 0.622317
Target:  5'- gGCGCcgacgguGCCCAGGAGGUGGGaGAa -3'
miRNA:   3'- aUGCGcau----CGGGUCCUUCGCCUaCUc -5'
23574 5' -56.3 NC_005261.1 + 46697 0.69 0.684424
Target:  5'- cGCGCGUAGCCCGGGuccuCGGccauguccGAGa -3'
miRNA:   3'- aUGCGCAUCGGGUCCuuc-GCCua------CUC- -5'
23574 5' -56.3 NC_005261.1 + 46835 0.68 0.754698
Target:  5'- cGCGCGU-GCUCGGGAA-CGaGGUGGGc -3'
miRNA:   3'- aUGCGCAuCGGGUCCUUcGC-CUACUC- -5'
23574 5' -56.3 NC_005261.1 + 47771 0.7 0.622317
Target:  5'- gGCGCGUcuCCCGGuaGAAGCGGAaGGGc -3'
miRNA:   3'- aUGCGCAucGGGUC--CUUCGCCUaCUC- -5'
23574 5' -56.3 NC_005261.1 + 47866 0.68 0.764369
Target:  5'- --aGCGUAGCcagcggcagcguCCGGGGAGCGGcgGcGg -3'
miRNA:   3'- augCGCAUCG------------GGUCCUUCGCCuaCuC- -5'
23574 5' -56.3 NC_005261.1 + 50298 0.66 0.868416
Target:  5'- gGCGCGcGGCuCCAGGcccCGGGUGGc -3'
miRNA:   3'- aUGCGCaUCG-GGUCCuucGCCUACUc -5'
23574 5' -56.3 NC_005261.1 + 53782 0.66 0.868416
Target:  5'- aGCGCGUggcugcgcGGCCCGGG-GGCuGGucgccgGAGg -3'
miRNA:   3'- aUGCGCA--------UCGGGUCCuUCG-CCua----CUC- -5'
23574 5' -56.3 NC_005261.1 + 53835 0.66 0.875838
Target:  5'- cUGCGCGagcuggAGCUCgAGGcGGCGGccGAGg -3'
miRNA:   3'- -AUGCGCa-----UCGGG-UCCuUCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 55681 0.68 0.764369
Target:  5'- gGCGCGcGGCCgcgggcgaggaGGGggGCgaGGAUGGGg -3'
miRNA:   3'- aUGCGCaUCGGg----------UCCuuCG--CCUACUC- -5'
23574 5' -56.3 NC_005261.1 + 55794 0.68 0.744916
Target:  5'- gGCGCGgggccGGCCgGGGgcGCGGAcggcGGGg -3'
miRNA:   3'- aUGCGCa----UCGGgUCCuuCGCCUa---CUC- -5'
23574 5' -56.3 NC_005261.1 + 56144 0.68 0.743932
Target:  5'- gGCGCG-GGCCgAGGGuggcggcAGCGGcgGGGc -3'
miRNA:   3'- aUGCGCaUCGGgUCCU-------UCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 56337 0.79 0.206148
Target:  5'- -cCGCGUucaugcuggcGGCCgCAGGggGCGGGUGGGu -3'
miRNA:   3'- auGCGCA----------UCGG-GUCCuuCGCCUACUC- -5'
23574 5' -56.3 NC_005261.1 + 58289 0.66 0.844867
Target:  5'- gGC-CGgcGCgCCGGGggGCGcGggGAGg -3'
miRNA:   3'- aUGcGCauCG-GGUCCuuCGC-CuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 58511 0.75 0.365213
Target:  5'- gGCGCccgcGUCCAGGAGGCGGAUcGAGc -3'
miRNA:   3'- aUGCGcau-CGGGUCCUUCGCCUA-CUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.