miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 5' -56.3 NC_005261.1 + 22964 0.68 0.78334
Target:  5'- gACGaCGaGGCCgAGGAccgggaggaGGCGGcgGAGg -3'
miRNA:   3'- aUGC-GCaUCGGgUCCU---------UCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 23507 0.67 0.828162
Target:  5'- gGCGCG-GGCCCuGGGAGCacgcggucGGgcGAGc -3'
miRNA:   3'- aUGCGCaUCGGGuCCUUCG--------CCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 23698 0.71 0.611943
Target:  5'- gACGCGaGGCCCGcccggucggguGGcAAGCGGGUGGc -3'
miRNA:   3'- aUGCGCaUCGGGU-----------CC-UUCGCCUACUc -5'
23574 5' -56.3 NC_005261.1 + 25151 0.69 0.725056
Target:  5'- aGCGUGUgcaGGCCCuGGAAGCcGAUGc- -3'
miRNA:   3'- aUGCGCA---UCGGGuCCUUCGcCUACuc -5'
23574 5' -56.3 NC_005261.1 + 25388 0.71 0.580948
Target:  5'- gGCGCGcgGGUCgGGGGAGgagaGGGUGAGg -3'
miRNA:   3'- aUGCGCa-UCGGgUCCUUCg---CCUACUC- -5'
23574 5' -56.3 NC_005261.1 + 26580 0.67 0.801751
Target:  5'- gGCGCGggaGGgCUGGGAGGCGGcgGcGGg -3'
miRNA:   3'- aUGCGCa--UCgGGUCCUUCGCCuaC-UC- -5'
23574 5' -56.3 NC_005261.1 + 27319 0.7 0.643078
Target:  5'- cGCGCGcgGGUCaAGGggGCGGAacgGGGg -3'
miRNA:   3'- aUGCGCa-UCGGgUCCuuCGCCUa--CUC- -5'
23574 5' -56.3 NC_005261.1 + 27663 0.67 0.79262
Target:  5'- cACGUG-GGCCguGGAGcGCGGGUGuGc -3'
miRNA:   3'- aUGCGCaUCGGguCCUU-CGCCUACuC- -5'
23574 5' -56.3 NC_005261.1 + 28053 0.69 0.674132
Target:  5'- -uCGCGgaacugccGCCCGGGggGCGcGGUGGc -3'
miRNA:   3'- auGCGCau------CGGGUCCuuCGC-CUACUc -5'
23574 5' -56.3 NC_005261.1 + 28786 0.66 0.844867
Target:  5'- gGCGCGggcGCUCGcGGccGCGGcgGAGg -3'
miRNA:   3'- aUGCGCau-CGGGU-CCuuCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 30927 0.66 0.83661
Target:  5'- cACGCGgcGgCCuGGccGCGGcgGAGu -3'
miRNA:   3'- aUGCGCauCgGGuCCuuCGCCuaCUC- -5'
23574 5' -56.3 NC_005261.1 + 30936 0.66 0.875838
Target:  5'- gGCGC--AGCCCcucGGggGCGGGccucGAGg -3'
miRNA:   3'- aUGCGcaUCGGGu--CCuuCGCCUa---CUC- -5'
23574 5' -56.3 NC_005261.1 + 31356 0.66 0.860777
Target:  5'- gGCGCGUGGCCU-GGAugucgcagaucGCGGAccccGAGg -3'
miRNA:   3'- aUGCGCAUCGGGuCCUu----------CGCCUa---CUC- -5'
23574 5' -56.3 NC_005261.1 + 31694 0.68 0.78334
Target:  5'- gACGCGgccgccGCCgAGGAGGCGGugcUGGc -3'
miRNA:   3'- aUGCGCau----CGGgUCCUUCGCCu--ACUc -5'
23574 5' -56.3 NC_005261.1 + 32074 0.7 0.643078
Target:  5'- aGCGCGgcgcuggGGCUCGGGGAGcCGGAcuucgcgGAGg -3'
miRNA:   3'- aUGCGCa------UCGGGUCCUUC-GCCUa------CUC- -5'
23574 5' -56.3 NC_005261.1 + 32338 0.72 0.55029
Target:  5'- --gGCGUGGCCUGGGAcGCGGAccAGg -3'
miRNA:   3'- augCGCAUCGGGUCCUuCGCCUacUC- -5'
23574 5' -56.3 NC_005261.1 + 33141 0.66 0.852925
Target:  5'- -cCGCGgaaGGUCCGGGgcGCGGAg--- -3'
miRNA:   3'- auGCGCa--UCGGGUCCuuCGCCUacuc -5'
23574 5' -56.3 NC_005261.1 + 33702 0.67 0.79262
Target:  5'- cGCGCGgGGCCCGcugcacGaGggGCGG-UGGGg -3'
miRNA:   3'- aUGCGCaUCGGGU------C-CuuCGCCuACUC- -5'
23574 5' -56.3 NC_005261.1 + 34067 0.71 0.611943
Target:  5'- cGCGCGgcGCCCGcGGAcGGCGcGGUGGc -3'
miRNA:   3'- aUGCGCauCGGGU-CCU-UCGC-CUACUc -5'
23574 5' -56.3 NC_005261.1 + 34694 0.68 0.735032
Target:  5'- gGCcCGggGGCCgAGGAGGCGGcgGAu -3'
miRNA:   3'- aUGcGCa-UCGGgUCCUUCGCCuaCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.